RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CRB2Q5IJ48 1285 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 C1orf146Q5VVC0 180 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 HLA-DQA1Q5Y7H0 255 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 C16orf62Q7Z3J2 963 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 SLC44A2Q8IWA5 706 aaPredicted RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 ANKFN1Q8N957 763 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 ZNF248Q8NDW4 579 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 WDR60Q8WVS4 1066 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 THAP4Q8WY91 577 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 POP5Q969H6 163 aaKnown RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 HSPBAP1Q96EW2 488 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 OTUB1Q96FW1 271 aaPredicted RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 TMEM19Q96HH6 336 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 TREX2Q9BQ50 279 aaPredicted RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 SAP130Q9H0E3 1048 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 NXF5Q9H1B4 397 aaKnown RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 DENND2DQ9H6A0 471 aaPredicted RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 ZNF160Q9HCG1 818 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 ANGPT4Q9Y264 503 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 DCHS1Q96JQ0 3298 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 WDFY3Q8IZQ1 3526 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 AKAP13Q12802 2813 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 DSPPQ9NZW4 1301 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 CEP295Q9C0D2 2601 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 GXYLT2A0PJZ3 443 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 AQP12BA6NM10 295 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 C5orf58C9J3I9 102 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 TLX3O43711 291 aaPredicted RBP13.18□□□□□ -0.3
SF3B1-204ENST00000414963 SLC28A2O43868 658 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 PRKNO60260 465 aaPredicted RBP13.18□□□□□ -0.3
SF3B1-204ENST00000414963 STAMBPO95630 424 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 BCHEP06276 602 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 CHRM4P08173 479 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 ETS2P15036 469 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 NCK1P16333 377 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 LCN1P31025 176 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 MRPS22P82650 360 aaKnown RBP13.18□□□□□ -0.3
SF3B1-204ENST00000414963 Q0VFX4 171 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 CHAF1BQ13112 559 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 ATP1A4Q13733 1029 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.18□□□□□ -0.3
SF3B1-204ENST00000414963 MTX3Q5HYI7 312 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 DCST2Q5T1A1 773 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 H3F3CQ6NXT2 135 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 PATL1Q86TB9 770 aaKnown RBP13.18□□□□□ -0.3
SF3B1-204ENST00000414963 VASH2Q86V25 355 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 AQP12AQ8IXF9 295 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 EID3Q8N140 333 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 AMER2Q8N7J2 671 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 GOLM1Q8NBJ4 401 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 BBS10Q8TAM1 723 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 FIG4Q92562 907 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 PIK3R3Q92569 461 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 FER1L6-AS2Q96M78 137 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 DEFB126Q9BYW3 111 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 TRIM15Q9C019 465 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 ZNF350Q9GZX5 532 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 SLC38A1Q9H2H9 487 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 MTHFD2LQ9H903 347 aaPredicted RBP13.18□□□□□ -0.3
SF3B1-204ENST00000414963 OLAHQ9NV23 265 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 CBLCQ9ULV8 474 aa13.18□□□□□ -0.3
SF3B1-204ENST00000414963 STX11O75558 287 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 PDE9AO76083 593 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 H6PDO95479 791 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 IL33O95760 270 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 CAPNS1P04632 268 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 NAGAP17050 411 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 ATP6V1B2P21281 511 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 SOX11P35716 441 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 CRYBA2P53672 197 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 CCNIQ14094 377 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 GPAT3Q53EU6 434 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 DCAF10Q5QP82 559 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 JMJD6Q6NYC1 403 aaPredicted RBP13.17□□□□□ -0.3
SF3B1-204ENST00000414963 KBTBD2Q8IY47 623 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 SLC15A4Q8N697 577 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 BCORP1Q8N888 145 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 OR4N2Q8NGD1 307 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 KCNE4Q8WWG9 221 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 OIT3Q8WWZ8 545 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 NSMCE2Q96MF7 247 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 GAL3ST4Q96RP7 486 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 G6PC3Q9BUM1 346 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 RUBCNLQ9H714 662 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 DCAF13Q9NV06 445 aaKnown RBP13.17□□□□□ -0.3
SF3B1-204ENST00000414963 MYOTQ9UBF9 498 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 MRTO4Q9UKD2 239 aaKnown RBP13.17□□□□□ -0.3
SF3B1-204ENST00000414963 OR10H1Q9Y4A9 318 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 CACNA1AO00555 2505 aa13.17□□□□□ -0.3
SF3B1-204ENST00000414963 TCRBV5S2A0A599 114 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 TCRBV3S1A0A5B6 114 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 ZNF891A8MT65 544 aaPredicted RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 M0QX08 132 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 FCMRO60667 390 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 ZIC2O95409 532 aaPredicted RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 IFNA14P01570 189 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 IGKV1D-16P01601 117 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 CELA2AP08217 269 aa13.16□□□□□ -0.3
SF3B1-204ENST00000414963 WT1P19544 449 aaPredicted RBP13.16□□□□□ -0.3
SF3B1-204ENST00000414963 NR0B1P51843 470 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms