RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ENPP7Q6UWV6 458 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR13C9Q8NGT0 318 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 MAP3K3Q99759 626 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 EBF4Q9BQW3 602 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 KCNH6Q9H252 994 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SYNPO2LQ9H987 977 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 RYDENQ9NUL5 291 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 TGM5O43548 720 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 VEGFDO43915 354 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 AOC1P19801 751 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 LRRC73Q5JTD7 316 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF836Q6ZNA1 936 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 RFPL4BQ6ZWI9 263 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 SMIM3Q9BZL3 60 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 RNF19AQ9NV58 838 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 MADDQ8WXG6 1647 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ATP1B2P14415 290 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ARSBP15848 533 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 MMP8P22894 467 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 APLNRP35414 380 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 HOXD12P35452 270 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 FBXO22Q8NEZ5 403 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 IL17RDQ8NFM7 739 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ANKRD9Q96BM1 317 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 MCHR1Q99705 422 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM181Q9P2C4 612 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 CHRNA9Q9UGM1 479 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ADORA3P0DMS8 318 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 UFM1P61960 85 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 INTS5Q6P9B9 1019 aaKnown RBP12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF440Q8IYI8 595 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ALG3Q92685 438 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 VSX1Q9NZR4 365 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 PCDHGC4Q9Y5F7 938 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 HLA-EP13747 358 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 HSF1Q00613 529 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 DLX2Q07687 328 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 C1orf87Q8N0U7 546 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF251Q9BRH9 671 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 ZBTB20Q9HC78 741 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 NKX1-2Q9UD57 310 aaPredicted RBP12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 SGSHP51688 502 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 OR4K14Q8NGD5 310 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 OR52H1Q8NGJ2 320 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 DZANK1Q9NVP4 752 aa12.71□□□□□ -0.37
CCDC88A-204ENST00000413716 MROH6A6NGR9 719 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 CILPO75339 1184 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 KCNK5O95279 499 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 ACP5P13686 325 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 EIF2DP41214 584 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 ACBD7Q8N6N7 88 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 HAVCR2Q8TDQ0 301 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 OLFM2O95897 454 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 CLCNKAP51800 687 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 RANP62826 216 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 MFGE8Q08431 387 aaPredicted RBP12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 TRNP1Q6NT89 227 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 LCLAT1Q6UWP7 414 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 FBXW12Q6X9E4 464 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF546Q86UE3 836 aa12.71□□□□□ -0.38
CCDC88A-204ENST00000413716 MEGF11A6BM72 1044 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 CXCL11O14625 94 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 HTRA2O43464 458 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 RAB3DO95716 219 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TK1P04183 234 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 GRIK5Q16478 980 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 LIPJQ5W064 366 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 CNIH2Q6PI25 160 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 EPGNQ6UW88 154 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 IQCKQ8N0W5 287 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TSTD1Q8NFU3 115 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 NKD2Q969F2 451 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 ITGB2P05107 769 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 OR8D2Q9GZM6 311 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 CUTCQ9NTM9 273 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 SPATA31A6Q5VVP1 1343 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM155AB1AL88 458 aaPredicted RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 EPOP01588 193 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TMEM198Q66K66 360 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 OR13J1Q8NGT2 312 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 COPS3Q9UNS2 423 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 FMN2Q9NZ56 1722 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 PRSS51A0A1B0GVH4 220 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 FKTNO75072 461 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 KCNK2O95069 426 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 RBMS1P29558 406 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 KDELR2P33947 212 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 ARHGAP1Q07960 439 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 DHRS9Q9BPW9 319 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 BCL7BQ9BQE9 202 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 CRB3Q9BUF7 120 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 LAG3P18627 525 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 PLPPR4Q7Z2D5 763 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 LRR1Q96L50 414 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TPRP12270 2363 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 TMEM235A6NFC5 223 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 SYN1P17600 705 aa12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 RPL11P62913 178 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 SNTB1Q13884 538 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-204ENST00000413716 OR4M1Q8NGD0 313 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms