RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 R3HCC1LQ7Z5L2 792 aaKnown RBP13.54□□□□□ -0.24
LIMS4-201ENST00000413601 OR1J4Q8NGS1 313 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 ZFP28Q8NHY6 868 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 NEIL3Q8TAT5 605 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 NUDT8Q8WV74 236 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 SARAFQ96BY9 339 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 ZBED6CLQ96FA7 236 aaPredicted RBP13.54□□□□□ -0.24
LIMS4-201ENST00000413601 UBQLN3Q9H347 655 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 TMBIM4Q9HC24 238 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 EQTNQ9NQ60 294 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 ATP6V1HQ9UI12 483 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.54□□□□□ -0.24
LIMS4-201ENST00000413601 HCFC1P51610 2035 aa13.54□□□□□ -0.24
LIMS4-201ENST00000413601 IFI6P09912 130 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 LAMP1P11279 417 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 PRPS2P11908 318 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 AGAP20933 346 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 ELAVL4P26378 380 aaKnown RBP13.53□□□□□ -0.24
LIMS4-201ENST00000413601 ACVR2AP27037 513 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 HTR1EP28566 365 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 GRNP28799 593 aaKnown RBP13.53□□□□□ -0.24
LIMS4-201ENST00000413601 PTPN6P29350 595 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 PNLIPRP2P54317 469 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 PSPHP78330 225 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 BST1Q10588 318 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 GAB1Q13480 694 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 EFR3AQ14156 821 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 ZNHIT3Q15649 155 aaPredicted RBP13.53□□□□□ -0.24
LIMS4-201ENST00000413601 CYP27C1Q4G0S4 372 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 SP5Q6BEB4 398 aaPredicted RBP13.53□□□□□ -0.24
LIMS4-201ENST00000413601 TMEM211Q6ICI0 200 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 KRTCAP2Q8N6L1 136 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 MGARPQ8TDB4 240 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 TLCD1Q96CP7 247 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 ACSS1Q9NUB1 689 aaPredicted RBP13.53□□□□□ -0.24
LIMS4-201ENST00000413601 ALKBH4Q9NXW9 302 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 CBLCQ9ULV8 474 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 MAPRE3Q9UPY8 281 aa13.53□□□□□ -0.24
LIMS4-201ENST00000413601 EIF3LQ9Y262 564 aaKnown RBP13.53□□□□□ -0.24
LIMS4-201ENST00000413601 C15orf38-AP3S2A0A0A6YYH1 394 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 SNPHO15079 494 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 SNUPNO95149 360 aaKnown RBP13.52□□□□□ -0.25
LIMS4-201ENST00000413601 CLDN14O95500 239 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 HPNP05981 417 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 G6PDP11413 515 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 CYP4B1P13584 511 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 GABRA3P34903 492 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 RPL3P39023 403 aaKnown RBP13.52□□□□□ -0.25
LIMS4-201ENST00000413601 PRKAG1P54619 331 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 NUP107P57740 925 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 EMX2Q04743 252 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 PMPCAQ10713 525 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 CASP8Q14790 479 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 EIPR1Q53HC9 387 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 WLSQ5T9L3 541 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 CPTPQ5TA50 214 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 RTL6Q6ICC9 239 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 SZRD1Q7Z422 152 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 WDSUB1Q8N9V3 476 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 NUP43Q8NFH3 380 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 SDCCAG3Q96C92 435 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 LMF2Q9BU23 707 aaKnown RBP13.52□□□□□ -0.25
LIMS4-201ENST00000413601 AKTIPQ9H8T0 292 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 Q9N2J8 555 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 SERHLQ9NQF3 203 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 PNPOQ9NVS9 261 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 HAO1Q9UJM8 370 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 SLC6A5Q9Y345 797 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 KLF2Q9Y5W3 355 aaPredicted RBP13.52□□□□□ -0.25
LIMS4-201ENST00000413601 KIAA1549Q9HCM3 1950 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 MED12Q93074 2177 aa13.52□□□□□ -0.25
LIMS4-201ENST00000413601 A0A1W2PRB8 838 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 GXYLT2A0PJZ3 443 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 FIGNL2A6NMB9 653 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 DDX5P17844 614 aaKnown RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 PRPS1L1P21108 318 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 RFX3P48380 749 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 MRPS22P82650 360 aaKnown RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 MAD2L1Q13257 205 aaPredicted RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 DECR1Q16698 335 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 ZNF630Q2M218 657 aaPredicted RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 WIPI1Q5MNZ9 446 aaPredicted RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 OR5M10Q6IEU7 315 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 YRDCQ86U90 279 aaKnown RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 RIMKLAQ8IXN7 391 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 FAM83FQ8NEG4 500 aaPredicted RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 CEP70Q8NHQ1 597 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 GPR151Q8TDV0 419 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 PIK3R3Q92569 461 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 RND1Q92730 232 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 NUF2Q9BZD4 464 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 C3orf14Q9HBI5 128 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 SIRT3Q9NTG7 399 aaPredicted RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 COQ3Q9NZJ6 369 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 NOP53Q9NZM5 478 aaKnown RBP13.51□□□□□ -0.25
LIMS4-201ENST00000413601 FLRT3Q9NZU0 649 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 NTMQ9P121 344 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 FAM215AQ9Y5M1 114 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 WIF1Q9Y5W5 379 aa13.51□□□□□ -0.25
LIMS4-201ENST00000413601 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms