RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ITGA3P26006 1051 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 HTR1EP28566 365 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 KRT20P35900 424 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 NRG3P56975 720 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 BNIP2Q12982 314 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 DECR1Q16698 335 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 ARHGAP11BQ3KRB8 267 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 CYP27C1Q4G0S4 372 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 DCST2Q5T1A1 773 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 FIGNL1Q6PIW4 674 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 CCDC81Q6ZN84 652 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 ERMP1Q7Z2K6 904 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 SLC5A8Q8N695 610 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 C17orf47Q8NEP4 570 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 FIG4Q92562 907 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 HSPBAP1Q96EW2 488 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 TMEM19Q96HH6 336 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 CALML5Q9NZT1 146 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 MRTO4Q9UKD2 239 aaKnown RBP16.71■□□□□ 0.27
SDC1-203ENST00000403076 ANGPT4Q9Y264 503 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 DCHS1Q96JQ0 3298 aa16.71■□□□□ 0.27
SDC1-203ENST00000403076 CFAP73A6NFT4 308 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 ACOX3O15254 700 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 NCK1P16333 377 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 ATP6V1C1P21283 382 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 PCGF2P35227 344 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 CRISP3P54108 245 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 MRPS22P82650 360 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 TRIM25Q14258 630 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 DEFB109BQ30KR1 87 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 CCNJQ5T5M9 372 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 INTS11Q5TA45 600 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 FCRLBQ6BAA4 426 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 HEPHL1Q6MZM0 1159 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 REEP3Q6NUK4 255 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 C16orf47Q6ZP98 133 aaPredicted RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 GALNT10Q86SR1 603 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 RPS19BP1Q86WX3 136 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 SLC30A8Q8IWU4 369 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 PRR22Q8IZ63 422 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 METTL25Q8N6Q8 603 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 ZNF441Q8N8Z8 693 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 CHDHQ8NE62 594 aaPredicted RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 HIPK4Q8NE63 616 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 TRNT1Q96Q11 434 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 PCDHAC1Q9H158 963 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 CDCP1Q9H5V8 836 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 MYOTQ9UBF9 498 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 SLC7A8Q9UHI5 535 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 APC2O95996 2303 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 NCOR2Q9Y618 2525 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 PRAMEF27A3QJZ7 478 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 C1QTNF9BB2RNN3 333 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 CXCR6O00574 342 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 REM1O75628 298 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 KCNK2O95069 426 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 H6PDO95479 791 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 C1QTNF9P0C862 333 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 AQP1P29972 269 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 PIGAP37287 484 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 PLCXD2Q0VAA5 305 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 CHAF1BQ13112 559 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 GLYATQ6IB77 296 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 JMJD6Q6NYC1 403 aaPredicted RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 UNQ6494/PRO21346Q6UXR6 183 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 OLIG3Q7RTU3 272 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 SLC34A3Q8N130 599 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 SIRT6Q8N6T7 355 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 BCORP1Q8N888 145 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 SLC22A8Q8TCC7 542 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 BRIX1Q8TDN6 353 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 TMBIM1Q969X1 311 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 UTP4Q969X6 686 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 SDF2Q99470 211 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 SUCOQ9UBS9 1254 aaKnown RBP16.7■□□□□ 0.26
SDC1-203ENST00000403076 RAXQ9Y2V3 346 aa16.7■□□□□ 0.26
SDC1-203ENST00000403076 ACACAQ13085 2346 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 TO15178 435 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 STX11O75558 287 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 OR2J2O76002 312 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 GGT1P19440 569 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 IL12BP29460 328 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 PSMD4P55036 377 aaKnown RBP16.69■□□□□ 0.26
SDC1-203ENST00000403076 PSPHP78330 225 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 FUT5Q11128 374 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 VEZF1Q14119 521 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 RPS26P11Q5JNZ5 115 aaPredicted RBP16.69■□□□□ 0.26
SDC1-203ENST00000403076 LRRC74BQ6ZQY2 392 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 FAM162AQ96A26 154 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 LMF1Q96S06 567 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 G6PC3Q9BUM1 346 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 LHPPQ9H008 270 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 ING2Q9H160 280 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 MUC13Q9H3R2 512 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 MAGEL2Q9UJ55 1249 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 WDR45Q9Y484 360 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 ZNF451Q9Y4E5 1061 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 SNX13Q9Y5W8 968 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 PCSK5Q92824 1860 aa16.69■□□□□ 0.26
SDC1-203ENST00000403076 URB1O60287 2271 aaKnown RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms