RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CDS1Q92903 461 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 OTUB1Q96FW1 271 aaPredicted RBP13.19□□□□□ -0.3
SKA1-202ENST00000398452 TMEM19Q96HH6 336 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 RNF145Q96MT1 663 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 G6PC3Q9BUM1 346 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 NUDT9Q9BW91 350 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 BTBD2Q9BX70 525 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 ITPAQ9BY32 194 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 DEFB126Q9BYW3 111 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 ADPRHL2Q9NX46 363 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 SAMD4AQ9UPU9 718 aaKnown RBP13.19□□□□□ -0.3
SKA1-202ENST00000398452 PCDHGA6Q9Y5G7 932 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 HS3ST3B1Q9Y662 390 aa13.19□□□□□ -0.3
SKA1-202ENST00000398452 IGHV1-45A0A0A0MS14 117 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 A0A0G2JPF8 293 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 TRBV11-1A0A0K0K1C0 115 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 AQP12BA6NM10 295 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 A8MVJ9 347 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 HNRNPCL2B2RXH8 293 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 HNRNPCL3B7ZW38 293 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 STX11O75558 287 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 CREG1O75629 220 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 ZFAND5O76080 213 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 NKX2-2O95096 273 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 IGKV3-11P04433 115 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 HNRNPCL4P0DMR1 293 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 ACP2P11117 423 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 PSMA4P25789 261 aaKnown RBP13.18□□□□□ -0.3
SKA1-202ENST00000398452 AQP1P29972 269 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 TRHRP34981 398 aaPredicted RBP13.18□□□□□ -0.3
SKA1-202ENST00000398452 PPICP45877 212 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 GZMMP51124 257 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 ACTR3P61158 418 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 PCOLCEQ15113 449 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 TBC1D25Q3MII6 688 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 DCST2Q5T1A1 773 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 IRAK1BP1Q5VVH5 260 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 WDR53Q7Z5U6 358 aaPredicted RBP13.18□□□□□ -0.3
SKA1-202ENST00000398452 DTX1Q86Y01 620 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 PTOV1Q86YD1 416 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 SPPL2CQ8IUH8 684 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 AQP12AQ8IXF9 295 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 TAGAPQ8N103 731 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 EID3Q8N140 333 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 OR8K3Q8NH51 312 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 SLC38A5Q8WUX1 472 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 SLC35A4Q96G79 324 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 CRELD1Q96HD1 420 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 LCORQ96JN0 433 aaPredicted RBP13.18□□□□□ -0.3
SKA1-202ENST00000398452 VSTM2LQ96N03 204 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 TRNT1Q96Q11 434 aaKnown RBP13.18□□□□□ -0.3
SKA1-202ENST00000398452 UGT2B28Q9BY64 529 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 SERHL2Q9H4I8 314 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 GORASP2Q9H8Y8 452 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 GMPR2Q9P2T1 348 aaKnown RBP13.18□□□□□ -0.3
SKA1-202ENST00000398452 SLC13A4Q9UKG4 626 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 USP22Q9UPT9 525 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 FREM2Q5SZK8 3169 aa13.18□□□□□ -0.3
SKA1-202ENST00000398452 FER1L5A0AVI2 2057 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 FRG2CA6NGY1 282 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 ACOX3O15254 700 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 HS6ST1O60243 411 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 ZNF682O95780 498 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 HPP00738 406 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 C1QCP02747 245 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 TFPTP0C1Z6 253 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 UMPSP11172 480 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 COX6A1P12074 109 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 HOXB6P17509 224 aaKnown RBP13.17□□□□□ -0.3
SKA1-202ENST00000398452 KDELR2P33947 212 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 EFNA3P52797 238 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 RNF4P78317 190 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 ELF3P78545 371 aaPredicted RBP13.17□□□□□ -0.3
SKA1-202ENST00000398452 MRPS22P82650 360 aaKnown RBP13.17□□□□□ -0.3
SKA1-202ENST00000398452 MS4A2Q01362 244 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 ARHGAP11BQ3KRB8 267 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 CYP27C1Q4G0S4 372 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 FAM69BQ5VUD6 431 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 LRRC74BQ6ZQY2 392 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 PPP1R32Q7Z5V6 425 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 C10orf111Q8N326 155 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 SIMC1Q8NDZ2 872 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 OR11G2Q8NGC1 345 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 NUBPLQ8TB37 319 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 M1APQ8TC57 530 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 SPPL2AQ8TCT8 520 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 PIK3R3Q92569 461 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 HSPBAP1Q96EW2 488 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 RMND5BQ96G75 393 aaPredicted RBP13.17□□□□□ -0.3
SKA1-202ENST00000398452 FER1L6-AS2Q96M78 137 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 WWTR1Q9GZV5 400 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 DENND2DQ9H6A0 471 aaPredicted RBP13.17□□□□□ -0.3
SKA1-202ENST00000398452 ARMC7Q9H6L4 198 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 YY1AP1Q9H869 796 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 ZNF160Q9HCG1 818 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 POLE3Q9NRF9 147 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 P4HTMQ9NXG6 502 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 CBLCQ9ULV8 474 aa13.17□□□□□ -0.3
SKA1-202ENST00000398452 PPIEQ9UNP9 301 aaKnown RBP13.17□□□□□ -0.3
SKA1-202ENST00000398452 ZNF232Q9UNY5 417 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms