RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 BCKDHAP12694 445 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 CRYZQ08257 329 aaKnown RBP13.16□□□□□ -0.3
HMGN3-201ENST00000275036 ZNF155Q12901 538 aaPredicted RBP13.16□□□□□ -0.3
HMGN3-201ENST00000275036 SNTA1Q13424 505 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 PDE7AQ13946 482 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 MPP2Q14168 576 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 EIPR1Q53HC9 387 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 WLSQ5T9L3 541 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 SLC30A6Q6NXT4 461 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 B3GNT6Q6ZMB0 384 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 MEX3BQ6ZN04 569 aaKnown RBP13.16□□□□□ -0.3
HMGN3-201ENST00000275036 OR2L13Q8N349 312 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 LIX1Q8N485 282 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 OR1J4Q8NGS1 313 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 RNF138Q8WVD3 245 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 ASB5Q8WWX0 329 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 EFHD2Q96C19 240 aaPredicted RBP13.16□□□□□ -0.3
HMGN3-201ENST00000275036 ELP4Q96EB1 424 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 ZNF764Q96H86 408 aaPredicted RBP13.16□□□□□ -0.3
HMGN3-201ENST00000275036 REEP4Q9H6H4 257 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 ZNF395Q9H8N7 513 aaPredicted RBP13.16□□□□□ -0.3
HMGN3-201ENST00000275036 ALKBH4Q9NXW9 302 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 KLRF1Q9NZS2 232 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 MAPRE3Q9UPY8 281 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 SLC6A5Q9Y345 797 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 TMED5Q9Y3A6 229 aa13.16□□□□□ -0.3
HMGN3-201ENST00000275036 C15orf38-AP3S2A0A0A6YYH1 394 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 PDPK1O15530 556 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 CTIFO43310 598 aaKnown RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 ITM2AO43736 263 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 TBX19O60806 448 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 WDR1O75083 606 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 COQ9O75208 318 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 SKAP2O75563 359 aaPredicted RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 LYPLA1O75608 230 aaPredicted RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 SLITRK5O94991 958 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 ELAVL4P26378 380 aaKnown RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 MSX1P28360 303 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 SERPINB5P36952 375 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 FRKP42685 505 aaPredicted RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 SERPINB4P48594 390 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 WNT3P56703 355 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 HSPB3Q12988 150 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 WIPI1Q5MNZ9 446 aaPredicted RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 CEP85LQ5SZL2 805 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 DCST1Q5T197 706 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 C1orf185Q5T7R7 199 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 ACAD11Q709F0 780 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 LARP4Q71RC2 724 aaKnown RBP eCLIP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 NUDCD3Q8IVD9 361 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 ULK2Q8IYT8 1036 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 FAM83FQ8NEG4 500 aaPredicted RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 NUDT8Q8WV74 236 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 TIMP4Q99727 224 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 RUBCNLQ9H714 662 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 SERHLQ9NQF3 203 aa13.15□□□□□ -0.3
HMGN3-201ENST00000275036 DDX18Q9NVP1 670 aaKnown RBP13.15□□□□□ -0.3
HMGN3-201ENST00000275036 WDR91A4D1P6 747 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 PEX11AO75192 247 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 DHRS4L1P0CG22 281 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 CYP4B1P13584 511 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 EFNA1P20827 205 aaPredicted RBP13.14□□□□□ -0.31
HMGN3-201ENST00000275036 PNLIPRP2P54317 469 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 GAS1P54826 345 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 GAB1Q13480 694 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 TOMM20Q15388 145 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 C6orf136Q5SQH8 315 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 VASNQ6EMK4 673 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 YRDCQ86U90 279 aaKnown RBP13.14□□□□□ -0.31
HMGN3-201ENST00000275036 NAXEQ8NCW5 288 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 PPCDCQ96CD2 204 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 TMCO6Q96DC7 493 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 LMF2Q9BU23 707 aaKnown RBP13.14□□□□□ -0.31
HMGN3-201ENST00000275036 C1orf50Q9BV19 199 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 UGT2B28Q9BY64 529 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 C20orf27Q9GZN8 174 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 SSU72Q9NP77 194 aaKnown RBP13.14□□□□□ -0.31
HMGN3-201ENST00000275036 FLRT3Q9NZU0 649 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 SH3BP4Q9P0V3 963 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 OR10H1Q9Y4A9 318 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 PCDHGB3Q9Y5G1 929 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 WIF1Q9Y5W5 379 aa13.14□□□□□ -0.31
HMGN3-201ENST00000275036 MPDZO75970 2070 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 ENO4A6NNW6 628 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 IFI6P09912 130 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 BMP7P18075 431 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 IL12BP29460 328 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 EFR3AQ14156 821 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 PTGR1Q14914 329 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 CHI3L2Q15782 390 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 NHSL2Q5HYW2 709 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 OR5M10Q6IEU7 315 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 OR7A2PQ8NGA2 310 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 OR10Q1Q8NGQ4 319 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 GIMAP5Q96F15 307 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 C14orf79Q96F83 325 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 PPP3R2Q96LZ3 170 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 RTN4RQ9BZR6 473 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 OR2B2Q9GZK3 357 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms