RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ITM2BQ9Y287 266 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 PRG3Q9Y2Y8 225 aaPredicted RBP2.34□□□□□ -2.03
CD44-239ENST00000639002 MTCL1Q9Y4B5 1905 aaKnown RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 TBCAO75347 108 aaKnown RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 HSP90AB1P08238 724 aaKnown RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 PTBP1P26599 531 aaKnown RBP eCLIP2.33□□□□□ -2.04
CD44-239ENST00000639002 RAG2P55895 527 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 RBP5P82980 135 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 TSPY1Q01534 308 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 PUDPQ08623 228 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 ASPHD2Q6ICH7 369 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 ZNF589Q86UQ0 364 aaPredicted RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 H1FOOQ8IZA3 346 aaPredicted RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 MCOLN2Q8IZK6 566 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 OR52J3Q8NH60 311 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 DLX4Q92988 240 aaPredicted RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 SPATA17Q96L03 361 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 DCLRE1BQ9H816 532 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 RNPEPL1Q9HAU8 725 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 ZCCHC17Q9NP64 241 aaKnown RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 EXOSC3Q9NQT5 275 aaKnown RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 STARD5Q9NSY2 213 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 ACOXLQ9NUZ1 547 aa2.33□□□□□ -2.04
CD44-239ENST00000639002 LEF1Q9UJU2 399 aaPredicted RBP2.33□□□□□ -2.04
CD44-239ENST00000639002 ANKRD63C9JTQ0 380 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 SNAI2O43623 268 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 ZNF254O75437 659 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 MMP23AO75900 390 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 PGK1P00558 417 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 SERPINH1P50454 418 aaKnown RBP2.32□□□□□ -2.04
CD44-239ENST00000639002 BCL2L1Q07817 233 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 ZKSCAN8Q15776 578 aaPredicted RBP2.32□□□□□ -2.04
CD44-239ENST00000639002 ZNF630Q2M218 657 aaPredicted RBP2.32□□□□□ -2.04
CD44-239ENST00000639002 OR2B11Q5JQS5 317 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 PRAMEF8Q5VWM4 474 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 ZNF57Q68EA5 555 aaPredicted RBP2.32□□□□□ -2.04
CD44-239ENST00000639002 CXCL17Q6UXB2 119 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 SLC22A16Q86VW1 577 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 VSIG1Q86XK7 387 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 CLYBLQ8N0X4 340 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 CHCHD4Q8N4Q1 142 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 DCAF4L2Q8NA75 395 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 C18orf25Q96B23 403 aaPredicted RBP2.32□□□□□ -2.04
CD44-239ENST00000639002 RAB39BQ96DA2 213 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 SLC35E1Q96K37 410 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 APOOQ9BUR5 198 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 VPS54Q9P1Q0 977 aa2.32□□□□□ -2.04
CD44-239ENST00000639002 A0A0U1RQG5 324 aaPredicted RBP2.31□□□□□ -2.04
CD44-239ENST00000639002 A4D1N5 150 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 ERVV-1B6SEH8 477 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 GMNNO75496 209 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 GPX5O75715 221 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 SEMG1P04279 462 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 VCLP18206 1134 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 ZNF45Q02386 682 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 BFSP1Q12934 665 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 NPRL3Q12980 569 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 HSD17B13Q7Z5P4 300 aaPredicted RBP2.31□□□□□ -2.04
CD44-239ENST00000639002 PYROXD2Q8N2H3 581 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 GPATCH11Q8N954 259 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 GPR137Q96N19 417 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 TSPYL1Q9H0U9 437 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 GLIPR2Q9H4G4 154 aa2.31□□□□□ -2.04
CD44-239ENST00000639002 BARX2Q9UMQ3 279 aaPredicted RBP2.31□□□□□ -2.04
CD44-239ENST00000639002 FOXA2Q9Y261 457 aaPredicted RBP2.31□□□□□ -2.04
CD44-239ENST00000639002 A0A1B0GUA9 196 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 USP27XA6NNY8 438 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 SDC3O75056 442 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 ZNF44P15621 663 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 AXLP30530 894 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 ASIC1P78348 528 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 EGFEM1PQ0D2K5 195 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 ELAVL3Q14576 367 aaKnown RBP2.3□□□□□ -2.04
CD44-239ENST00000639002 CAMK4Q16566 473 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 CLPPQ16740 277 aaPredicted RBP2.3□□□□□ -2.04
CD44-239ENST00000639002 FAM133BQ5BKY9 247 aaKnown RBP2.3□□□□□ -2.04
CD44-239ENST00000639002 NAT8LQ8N9F0 302 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 CNIH4Q9P003 139 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 NRBP1Q9UHY1 535 aa2.3□□□□□ -2.04
CD44-239ENST00000639002 PURGQ9UJV8 347 aaKnown RBP2.3□□□□□ -2.04
CD44-239ENST00000639002 USP6P35125 1406 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 METP08581 1390 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 IGKV2D-24A0A075B6R9 120 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 A0A0J9YVX5 310 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 LRCOL1A6NCL2 159 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 HTATSF1O43719 755 aaKnown RBP2.29□□□□□ -2.04
CD44-239ENST00000639002 IGSF6O95976 241 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 RPL32P62910 135 aaKnown RBP2.29□□□□□ -2.04
CD44-239ENST00000639002 SHHQ15465 462 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 KCTD19Q17RG1 926 aaPredicted RBP2.29□□□□□ -2.04
CD44-239ENST00000639002 GPAT3Q53EU6 434 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 LINC00696Q6ZRV3 163 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 TSEN54Q7Z6J9 526 aaKnown RBP2.29□□□□□ -2.04
CD44-239ENST00000639002 ZNF786Q8N393 782 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 CSNK1A1LQ8N752 337 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 ZBTB44Q8NCP5 570 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 ZNF540Q8NDQ6 660 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 ZNF397Q8NF99 534 aaPredicted RBP2.29□□□□□ -2.04
CD44-239ENST00000639002 OR4A16Q8NH70 328 aa2.29□□□□□ -2.04
CD44-239ENST00000639002 NOL4LQ96MY1 436 aaPredicted RBP2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms