RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ARRDC1Q8N5I2 433 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SAMD12Q8N8I0 201 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 B3GNT7Q8NFL0 401 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 OR10G2Q8NGC3 310 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 OR13C3Q8NGS6 347 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 OR14K1Q8NGZ2 314 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 OR1S1Q8NH92 325 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM143Q96AN5 459 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 GPR22Q99680 433 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 NTPCRQ9BSD7 190 aaKnown RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TBC1D17Q9HA65 648 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ISYNA1Q9NPH2 558 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 SDR39U1Q9NRG7 319 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 TAS2R10Q9NYW0 307 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 GRHPRQ9UBQ7 328 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 ST3GAL5Q9UNP4 418 aa5.45□□□□□ -1.54
SCN1A-216ENST00000637968 EXO1Q9UQ84 846 aaKnown RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 PARP4Q9UKK3 1724 aaKnown RBP5.45□□□□□ -1.54
SCN1A-216ENST00000637968 PPP6CO00743 305 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SIAH2O43255 324 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 DFFBO76075 338 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SIX3O95343 332 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SLC25A27O95847 323 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PSMB4P28070 264 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 HOXC8P31273 242 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PTTG1IPP53801 180 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 UFM1P61960 85 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OLFML2AQ68BL7 652 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PSRC1Q6PGN9 363 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 LARP4Q71RC2 724 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SAMD7Q7Z3H4 446 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 FUNDC1Q8IVP5 155 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 FAM185AQ8N0U4 392 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 STK40Q8N2I9 435 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OR52N2Q8NGI0 321 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF461Q8TAF7 563 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PRR14Q9BWN1 585 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 EXO5Q9H790 373 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 EIF2B3Q9NR50 452 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CDV3Q9UKY7 258 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 HES2Q9Y543 173 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 RBM7Q9Y580 266 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 TARM1B6A8C7 271 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 NPIPB9F8W1W9 429 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CLIC1O00299 241 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PEX11BO96011 259 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 AK1P00568 194 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 UCHL1P09936 223 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 H2AFB1P0C5Y9 115 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SLC35G4P0C7Q5 338 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OR8G3PP0DMU2 310 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 MAPTP10636 758 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 EPB42P16452 691 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SLC6A1P30531 599 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 THBS4P35443 961 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 VAMP2P63027 116 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CXCL9Q07325 125 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SYTL3Q4VX76 610 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF385CQ66K41 422 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 LEMD1Q68G75 181 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OR5M10Q6IEU7 315 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 FRMPD2BQ6IN97 320 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 APOBEC3HQ6NTF7 200 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 THNSL2Q86YJ6 484 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OR6V1Q8N148 313 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 GPR137CQ8N3F9 429 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 JAGN1Q8N5M9 183 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 NEIL3Q8TAT5 605 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 KLHL5Q96PQ7 755 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 RNF146Q9NTX7 359 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 TXNL4BQ9NX01 149 aaKnown RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 GSKIPQ9P0R6 139 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 STARD10Q9Y365 291 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 IRAK3Q9Y616 596 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ANKRD12Q6UB98 2062 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 TEX13DA0A0J9YY54 714 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 J3KR12 359 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 DDNO94850 711 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 DIRAS1O95057 198 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PRSS23O95084 383 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 HPP00738 406 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 MYOGP15173 224 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 MGMTP16455 207 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 DAPP51397 102 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 JAK3P52333 1124 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 HMGCS2P54868 508 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 RAG2P55895 527 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PRR5P85299 388 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 MLLT11Q13015 90 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 HABP2Q14520 560 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 NDUFA9Q16795 377 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 PAGE3Q5JUK9 113 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 ANKRD34AQ69YU3 496 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 SFRP4Q6FHJ7 346 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-216ENST00000637968 C1orf186Q6ZWK4 172 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 FBXO39Q8N4B4 442 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OR10R2Q8NGX6 335 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OR6K3Q8NGY3 331 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 OLIG1Q8TAK6 271 aa5.44□□□□□ -1.54
SCN1A-216ENST00000637968 CD300LFQ8TDQ1 290 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 136.7 ms