RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 HOXB3P14651 431 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 PRKAR1BP31321 381 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 PTGER1P34995 402 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 NKX2-5P52952 324 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 CHRNEQ04844 493 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 SCN1BQ07699 218 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 CST6Q15828 149 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 RSBN1Q5VWQ0 802 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 C18orf63Q68DL7 685 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 RAB43Q86YS6 212 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 C12orf76Q8N812 135 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 POGLUT1Q8NBL1 392 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 OR2L3Q8NG85 312 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 OR52E1Q8NGJ3 308 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ELP4Q96EB1 424 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 MACROD1Q9BQ69 325 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 KATNB1Q9BVA0 655 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 QRSL1Q9H0R6 528 aaKnown RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 TPK1Q9H3S4 243 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 RMI1Q9H9A7 625 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 TRPV4Q9HBA0 871 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 CTPS2Q9NRF8 586 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 SEMA4GQ9NTN9 838 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF221Q9UK13 617 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ZFR2Q9UPR6 939 aaKnown RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 SLC17A4Q9Y2C5 497 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 GPR55Q9Y2T6 319 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 HEATR5BQ9P2D3 2071 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 KLF4O43474 513 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 PROM1O43490 865 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 STATHP02808 62 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 KRT8P05787 483 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ALPPL2P10696 532 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 FPR3P25089 353 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 PEBP1P30086 187 aaKnown RBP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SDC2P34741 201 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 MPIP34949 423 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 STAT5AP42229 794 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 MXD1Q05195 221 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 TGM3Q08188 693 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ST3GAL3Q11203 375 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SF3B4Q15427 424 aaKnown RBP eCLIP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 NDUFA5Q16718 116 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 TMEM44Q2T9K0 475 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF628Q5EBL2 1059 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF362Q5T0B9 420 aaPredicted RBP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ATAD3CQ5T2N8 411 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 DDI2Q5TDH0 399 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 AADACL4Q5VUY2 407 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 FAM20CQ8IXL6 584 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 FBXL6Q8N531 539 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 MFSD9Q8NBP5 474 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 NUP43Q8NFH3 380 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 PIGXQ8TBF5 258 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SLC9A6Q92581 669 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 TMEM203Q969S6 136 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 GIMAP5Q96F15 307 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 TIGARQ9NQ88 270 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 PRKAG2Q9UGJ0 569 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 KCNK6Q9Y257 313 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 YARS2Q9Y2Z4 477 aaKnown RBP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 RBMX2Q9Y388 322 aaKnown RBP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 A0A1W2PS29 197 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 CEACAM5P06731 702 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 AZGP1P25311 298 aaKnown RBP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 CERS1P27544 350 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 DDOSTP39656 456 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ENPP2Q13822 863 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 DECR1Q16698 335 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 CCDC92Q53HC0 331 aaPredicted RBP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 TMEM240Q5SV17 173 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF425Q6IV72 752 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 FAM131AQ6UXB0 335 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF730Q6ZMV8 503 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 VRK2Q86Y07 508 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 GATAD2BQ8WXI9 593 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 AP3S1Q92572 193 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 OSTF1Q92882 214 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 FGF13Q92913 245 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 TP53INP1Q96A56 240 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 ZG16BQ96DA0 208 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SNX18Q96RF0 628 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 COQ7Q99807 217 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 PRR14Q9BWN1 585 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 OR2B2Q9GZK3 357 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SLC22A4Q9H015 551 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SYNPO2LQ9H987 977 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 GIMAP4Q9NUV9 329 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 MED17Q9NVC6 651 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 NTMQ9P121 344 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SERGEFQ9UGK8 458 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 APOBEC3BQ9UH17 382 aaKnown RBP11.97□□□□□ -0.49
LINC00540-203ENST00000631321 SLC13A4Q9UKG4 626 aa11.97□□□□□ -0.49
LINC00540-203ENST00000631321 TRDV1A0A1B0GX56 115 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 FABP12A6NFH5 140 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 POLR1CO15160 346 aaPredicted RBP11.96□□□□□ -0.49
LINC00540-203ENST00000631321 LATO43561 262 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 KAT7O95251 611 aa11.96□□□□□ -0.49
LINC00540-203ENST00000631321 ZIC2O95409 532 aaPredicted RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms