RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 NPSR1Q6W5P4 371 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 C3P1Q6ZMU1 363 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 ZNF551Q7Z340 670 aaPredicted RBP14.66□□□□□ -0.06
BRCA1-228ENST00000618469 GDF7Q7Z4P5 450 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 ZFP28Q8NHY6 868 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 TMBIM1Q969X1 311 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 SECISBP2Q96T21 854 aaKnown RBP14.66□□□□□ -0.06
BRCA1-228ENST00000618469 C20orf27Q9GZN8 174 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 RUBCNLQ9H714 662 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 METTL7AQ9H8H3 244 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 TAS2R9Q9NYW1 312 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 SH3BP4Q9P0V3 963 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 B4GALT7Q9UBV7 327 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 GPR55Q9Y2T6 319 aaPredicted RBP14.66□□□□□ -0.06
BRCA1-228ENST00000618469 RAP2CQ9Y3L5 183 aa14.66□□□□□ -0.06
BRCA1-228ENST00000618469 A0A087WV62 115 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 SCAMP2O15127 329 aaKnown RBP14.65□□□□□ -0.06
BRCA1-228ENST00000618469 TO15178 435 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 TBX19O60806 448 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 UGT2B11O75310 529 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 RFPL3SP0C7P2 107 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 CT45A8P0DMV1 189 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 CT45A9P0DMV2 189 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 NAGAP17050 411 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 GDF1P27539 372 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 KRTAP10-9P60411 292 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 HYAL4Q2M3T9 481 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 CT45A2Q5DJT8 189 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 C6orf136Q5SQH8 315 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 NCCRP1Q6ZVX7 275 aaPredicted RBP14.65□□□□□ -0.06
BRCA1-228ENST00000618469 SZRD1Q7Z422 152 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 OR2L13Q8N349 312 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 FAM57AQ8TBR7 257 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 ITLN2Q8WWU7 325 aaPredicted RBP14.65□□□□□ -0.06
BRCA1-228ENST00000618469 HGDQ93099 445 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 ZBED6CLQ96FA7 236 aaPredicted RBP14.65□□□□□ -0.06
BRCA1-228ENST00000618469 SORT1Q99523 831 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 OSBPL11Q9BXB4 747 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 EXO5Q9H790 373 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 TMBIM4Q9HC24 238 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 KLRF1Q9NZS2 232 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 C19orf53Q9UNZ5 99 aaPredicted RBP14.65□□□□□ -0.06
BRCA1-228ENST00000618469 OR10H1Q9Y4A9 318 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 PCNX1Q96RV3 2341 aa14.65□□□□□ -0.06
BRCA1-228ENST00000618469 ZNF407Q9C0G0 2248 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 ANKRD33BA6NCL7 494 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 UPK1AO00322 258 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 PLOD2O00469 737 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 TRIM3O75382 744 aaPredicted RBP14.64□□□□□ -0.07
BRCA1-228ENST00000618469 REM1O75628 298 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 SNUPNO95149 360 aaKnown RBP14.64□□□□□ -0.07
BRCA1-228ENST00000618469 PSMG1O95456 288 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 IGHG3P01860 377 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 EFNA1P20827 205 aaPredicted RBP14.64□□□□□ -0.07
BRCA1-228ENST00000618469 HTR1EP28566 365 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 IL12BP29460 328 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 KRT20P35900 424 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 CASP3P42574 277 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 RPL14P50914 215 aaKnown RBP14.64□□□□□ -0.07
BRCA1-228ENST00000618469 WDR4P57081 412 aaKnown RBP14.64□□□□□ -0.07
BRCA1-228ENST00000618469 BST1Q10588 318 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 STX3Q13277 289 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 IL23RQ5VWK5 629 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 TMEM198Q66K66 360 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 TRILQ7L0X0 811 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 R3HCC1LQ7Z5L2 792 aaKnown RBP14.64□□□□□ -0.07
BRCA1-228ENST00000618469 DOLPP1Q86YN1 238 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 SLC44A2Q8IWA5 706 aaPredicted RBP14.64□□□□□ -0.07
BRCA1-228ENST00000618469 TLCD1Q96CP7 247 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 MTERF3Q96E29 417 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 ELP4Q96EB1 424 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 COL21A1Q96P44 957 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 NODALQ96S42 347 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 ANGPTL4Q9BY76 406 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 LDAHQ9H6V9 325 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 EQTNQ9NQ60 294 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 NKIRAS1Q9NYS0 192 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 MEMO1Q9Y316 297 aa14.64□□□□□ -0.07
BRCA1-228ENST00000618469 GTF3C1Q12789 2109 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 NINQ8N4C6 2090 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 PRAMEF25A6NGN4 478 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 NPIPA2E9PIF3 369 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 NPIPA3F8WFD2 350 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 SNX4O95219 450 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 PRPS2P11908 318 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 COX6B1P14854 86 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 DDX5P17844 614 aaKnown RBP14.63□□□□□ -0.07
BRCA1-228ENST00000618469 RPL3P39023 403 aaKnown RBP14.63□□□□□ -0.07
BRCA1-228ENST00000618469 MAN2A2P49641 1150 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 CDK9P50750 372 aaKnown RBP14.63□□□□□ -0.07
BRCA1-228ENST00000618469 PSPHP78330 225 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 PSG6Q00889 435 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 MAD2L1Q13257 205 aaPredicted RBP14.63□□□□□ -0.07
BRCA1-228ENST00000618469 SLC10A1Q14973 349 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 RPTNQ6XPR3 784 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 LARP4Q71RC2 724 aaKnown RBP eCLIP14.63□□□□□ -0.07
BRCA1-228ENST00000618469 NUP54Q7Z3B4 507 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 WDR53Q7Z5U6 358 aaPredicted RBP14.63□□□□□ -0.07
BRCA1-228ENST00000618469 PACS2Q86VP3 889 aa14.63□□□□□ -0.07
BRCA1-228ENST00000618469 KIRREL3Q8IZU9 778 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms