RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 WISP2O76076 250 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 ABCB1P08183 1280 aaPredicted RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 PIGAP37287 484 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 DNASE1L1P49184 302 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 FBXW4P57775 412 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 OCRLQ01968 901 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 SRSF11Q05519 484 aaKnown RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 PLCXD2Q0VAA5 305 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 TTMPQ5BVD1 217 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 OGFOD2Q6N063 350 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 ANKRD26P1Q6NSI1 321 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 NPSR1Q6W5P4 371 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 CAMKMTQ7Z624 323 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 FAM109AQ8N4B1 249 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 CIDECQ96AQ7 238 aaPredicted RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 COQ8BQ96D53 544 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 OMA1Q96E52 524 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 SLC35A4Q96G79 324 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 ANGPTL4Q9BY76 406 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 TSPAN10Q9H1Z9 355 aaPredicted RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 MANSC1Q9H8J5 431 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 ATAD3AQ9NVI7 634 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 DDX18Q9NVP1 670 aaKnown RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 PNPOQ9NVS9 261 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 TUBA8Q9NY65 449 aaPredicted RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 SH3BP4Q9P0V3 963 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 BOKQ9UMX3 212 aaPredicted RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.85□□□□□ -0.03
LSM4-206ENST00000600289 NINQ8N4C6 2090 aa14.85□□□□□ -0.03
LSM4-206ENST00000600289 HMGB1P1B2RPK0 211 aaPredicted RBP14.84□□□□□ -0.03
LSM4-206ENST00000600289 HS6ST1O60243 411 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 SLC19A2O60779 497 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 TRIM3O75382 744 aaPredicted RBP14.84□□□□□ -0.03
LSM4-206ENST00000600289 SNX4O95219 450 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 IGHG3P01860 377 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 RFC3P40938 356 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 CA7P43166 264 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 CLDN8P56748 225 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 PPIAP62937 165 aaKnown RBP14.84□□□□□ -0.03
LSM4-206ENST00000600289 KCNJ2P63252 427 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 PSG6Q00889 435 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 PLGLB1Q02325 96 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 SNTA1Q13424 505 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 NNATQ16517 81 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 TMEM64Q6YI46 380 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 LARP4Q71RC2 724 aaKnown RBP eCLIP14.84□□□□□ -0.031e-6■■■□□ 15.8
LSM4-206ENST00000600289 ZNF551Q7Z340 670 aaPredicted RBP14.84□□□□□ -0.03
LSM4-206ENST00000600289 TMEM251Q8N6I4 163 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 PSMA8Q8TAA3 256 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 DIO2Q92813 273 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 LMF2Q9BU23 707 aaKnown RBP14.84□□□□□ -0.03
LSM4-206ENST00000600289 NUF2Q9BZD4 464 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 ZNF703Q9H7S9 590 aaPredicted RBP14.84□□□□□ -0.03
LSM4-206ENST00000600289 ZFP64Q9NPA5 681 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 QPCTLQ9NXS2 382 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 DCHS2Q6V1P9 2916 aa14.84□□□□□ -0.03
LSM4-206ENST00000600289 NCOA6Q14686 2063 aaPredicted RBP14.83□□□□□ -0.03
LSM4-206ENST00000600289 LRRC3CA6NJW4 275 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 TRPC5OSA6NMA1 111 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 G3V3Y1 287 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 HDAC3O15379 428 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 TSPAN2O60636 221 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 G6PDP11413 515 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 MAP3K8P41279 467 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 CASP3P42574 277 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 MANFP55145 182 aaKnown RBP14.83□□□□□ -0.04
LSM4-206ENST00000600289 PER3P56645 1201 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 CORO7P57737 925 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 ZNF155Q12901 538 aaPredicted RBP14.83□□□□□ -0.04
LSM4-206ENST00000600289 HSPB3Q12988 150 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 CPTPQ5TA50 214 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 PRAMEF20Q5VT98 475 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 PAOXQ6QHF9 649 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 FGD2Q7Z6J4 655 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 SPPL2CQ8IUH8 684 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 PRR22Q8IZ63 422 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 OR7A2PQ8NGA2 310 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 OR52N2Q8NGI0 321 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 RNF138Q8WVD3 245 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 MARVELD3Q96A59 401 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 TMEM41AQ96HV5 264 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 MAGED4Q96JG8 741 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 ZNF597Q96LX8 424 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 COL21A1Q96P44 957 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 PRPF18Q99633 342 aaKnown RBP14.83□□□□□ -0.04
LSM4-206ENST00000600289 DOHHQ9BU89 302 aa14.83□□□□□ -0.04
LSM4-206ENST00000600289 BHLHE41Q9C0J9 482 aaPredicted RBP14.83□□□□□ -0.04
LSM4-206ENST00000600289 A0A1B0GVC2 190 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 SDHDO14521 159 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 LRRTM2O43300 516 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 UGT2B11O75310 529 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 LAMP1P11279 417 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 LBPP18428 481 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 GPC1P35052 558 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 CDK9P50750 372 aaKnown RBP14.82□□□□□ -0.04
LSM4-206ENST00000600289 PNLIPRP2P54317 469 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 EFR3AQ14156 821 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 CYP27C1Q4G0S4 372 aa14.82□□□□□ -0.04
LSM4-206ENST00000600289 EXOSC6Q5RKV6 272 aaKnown RBP14.82□□□□□ -0.04
LSM4-206ENST00000600289 SLC30A6Q6NXT4 461 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms