RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 KIAA0355O15063 1070 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 HOXA11P31270 313 aaPredicted RBP19.41■□□□□ 0.7
UPF1-207ENST00000599848 GJA4P35212 333 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 CDKN3Q16667 212 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 TMEM69Q5SWH9 247 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 RSC1A1Q92681 617 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 MRI1Q9BV20 369 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 ATG5Q9H1Y0 275 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 HEBP1Q9NRV9 189 aa19.41■□□□□ 0.7
UPF1-207ENST00000599848 WNT11O96014 354 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 FECHP22830 423 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 CTXN1P60606 82 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 SNX29P2Q8IUI4 249 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 ZNF595Q8IYB9 648 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 ZNF285Q96NJ3 590 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 CCM2LQ9NUG4 571 aaPredicted RBP19.4■□□□□ 0.7
UPF1-207ENST00000599848 HTR1EP28566 365 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 SOX2P48431 317 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 FXYD6P3P58550 94 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 RACK1P63244 317 aaKnown RBP19.4■□□□□ 0.7
UPF1-207ENST00000599848 XKRXQ6PP77 449 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 RELL1Q8IUW5 271 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 ESX1Q8N693 406 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 COQ8AQ8NI60 647 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 LINC00597Q9H2U6 94 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 CDRT1O95170 752 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 IRF4Q15306 451 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 TRIM46Q7Z4K8 759 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 ACBD7Q8N6N7 88 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 PEBP4Q96S96 227 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 AMBNQ9NP70 447 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 WIF1Q9Y5W5 379 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 EDN1P05305 212 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 GLDCP23378 1020 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 S100A2P29034 98 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 DCDP81605 110 aaKnown RBP19.4■□□□□ 0.7
UPF1-207ENST00000599848 FOXRED2Q8IWF2 684 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 SPHK1Q9NYA1 384 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 GSKIPQ9P0R6 139 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 PADI1Q9ULC6 663 aa19.4■□□□□ 0.7
UPF1-207ENST00000599848 SLC9B1P1A6NJY1 282 aa19.39■□□□□ 0.7
UPF1-207ENST00000599848 CASC3O15234 703 aaKnown RBP19.39■□□□□ 0.7
UPF1-207ENST00000599848 IST1P53990 364 aa19.39■□□□□ 0.7
UPF1-207ENST00000599848 INHBCP55103 352 aa19.39■□□□□ 0.7
UPF1-207ENST00000599848 TXNRD3NBQ6F5E7 133 aa19.39■□□□□ 0.7
UPF1-207ENST00000599848 PSAPL1Q6NUJ1 521 aa19.39■□□□□ 0.7
UPF1-207ENST00000599848 RHBDF1Q96CC6 855 aa19.39■□□□□ 0.7
UPF1-207ENST00000599848 EBF4Q9BQW3 602 aa19.39■□□□□ 0.7
UPF1-207ENST00000599848 TRBV11-1A0A0K0K1C0 115 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 WASH4PA8MWX3 477 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 H3BML4 177 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 ADAP00813 363 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 C7P10643 843 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 SSR4P51571 173 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 GSCP56915 257 aaPredicted RBP19.39■□□□□ 0.69
UPF1-207ENST00000599848 SMAD4Q13485 552 aaKnown RBP19.39■□□□□ 0.69
UPF1-207ENST00000599848 DEFB110Q30KQ9 67 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 SFXN5Q8TD22 340 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 PCDHAC1Q9H158 963 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 CMAHPQ9Y471 501 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 NUMBLQ9Y6R0 609 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 SLC43A1O75387 559 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 UCHL1P09936 223 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 KDELR2P33947 212 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 ZDHHC24Q6UX98 284 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 DEFB123Q8N688 67 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 SOCS7O14512 581 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 SIGLEC6O43699 453 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 GLO1Q04760 184 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 BCL2A1Q16548 175 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 OGFRL1Q5TC84 451 aaPredicted RBP19.39■□□□□ 0.69
UPF1-207ENST00000599848 KCTD9Q7L273 389 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 KDM1BQ8NB78 822 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 NLGN4YQ8NFZ3 816 aaPredicted RBP19.39■□□□□ 0.69
UPF1-207ENST00000599848 HINT2Q9BX68 163 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 SYT4Q9H2B2 425 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 RDH14Q9HBH5 336 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 ZDHHC18Q9NUE0 388 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 MYOTQ9UBF9 498 aa19.39■□□□□ 0.69
UPF1-207ENST00000599848 SYT7O43581 403 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 PIGGQ5H8A4 983 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 YOD1Q5VVQ6 348 aaPredicted RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 UGT2A3Q6UWM9 527 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 TMEM184AQ6ZMB5 413 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 PRMT8Q9NR22 394 aaPredicted RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 ENAMQ9NRM1 1142 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 DNAJC27Q9NZQ0 273 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 TAAR2Q9P1P5 351 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 TP53TG5Q9Y2B4 290 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 K7ERQ8 282 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 MRPL33O75394 65 aaKnown RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 ACTBP60709 375 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 ACTG1P63261 375 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 C6orf141Q5SZD1 244 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 SLX4IPQ5VYV7 408 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 LEG1Q6P5S2 330 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 TMEM139Q8IV31 216 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 ZC3H3Q8IXZ2 948 aaKnown RBP19.38■□□□□ 0.69
UPF1-207ENST00000599848 LSMEM2Q8N112 164 aa19.38■□□□□ 0.69
UPF1-207ENST00000599848 MSI2Q96DH6 328 aaKnown RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms