RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 DESI1Q6ICB0 168 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 TMEM107Q6UX40 140 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 ANGPTL8Q6UXH0 198 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 SLC44A2Q8IWA5 706 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-203ENST00000593582 OR2T11Q8NH01 316 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 LILRB4Q8NHJ6 448 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 TWIST2Q8WVJ9 160 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 EGLN2Q96KS0 407 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 AMDHD1Q96NU7 426 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 NODALQ96S42 347 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 ADOQ96SZ5 270 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 TUBB1Q9H4B7 451 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 GALNT9Q9HCQ5 603 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 DDX18Q9NVP1 670 aaKnown RBP13.96□□□□□ -0.17
TRIM28-203ENST00000593582 C19orf53Q9UNZ5 99 aaPredicted RBP13.96□□□□□ -0.17
TRIM28-203ENST00000593582 EXO1Q9UQ84 846 aaKnown RBP13.96□□□□□ -0.17
TRIM28-203ENST00000593582 OR10H1Q9Y4A9 318 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 FAM215AQ9Y5M1 114 aa13.96□□□□□ -0.17
TRIM28-203ENST00000593582 CSMD1Q96PZ7 3565 aa13.96□□□□□ -0.18
TRIM28-203ENST00000593582 DNAJC13O75165 2243 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 LRBAP50851 2863 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 ESPNB1AK53 854 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 TMEM233B4DJY2 109 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 FAM47E-STBD1D6RA91 191 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 LSM1O15116 133 aaKnown RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 RGS16O15492 202 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 CREB1P16220 341 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 RPL38P63173 70 aaKnown RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 MRPS22P82650 360 aaKnown RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 EFR3AQ14156 821 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 GALNTL6Q49A17 601 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 RFTN2Q52LD8 501 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 RTL6Q6ICC9 239 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 NPSR1Q6W5P4 371 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 ZCCHC23Q6ZST2 131 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 LARP4Q71RC2 724 aaKnown RBP eCLIP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 CCDC71Q8IV32 467 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 AGR3Q8TD06 166 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 GFM2Q969S9 779 aaKnown RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 NTNG2Q96CW9 530 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 SLC35A4Q96G79 324 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 ZNF764Q96H86 408 aaPredicted RBP13.95□□□□□ -0.18
TRIM28-203ENST00000593582 FCRL1Q96LA6 429 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 KCNJ16Q9NPI9 418 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 CACNA1DQ01668 2161 aa13.95□□□□□ -0.18
TRIM28-203ENST00000593582 NINQ8N4C6 2090 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 C2orf72A6NCS6 295 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 FAM90A27PA6NNH2 459 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 UPK1AO00322 258 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 PIP5K1BO14986 540 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 SNPHO15079 494 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 PDPK1O15530 556 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 AKAP10O43572 662 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 TYROBPO43914 113 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 CBR3O75828 277 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 TUBBP07437 444 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 BPGMP07738 259 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 SDC1P18827 310 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 PTPN6P29350 595 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 GCKP35557 465 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 PTGDSP41222 190 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 KIR3DL1P43629 444 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 ASMTP46597 345 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 PNLIPRP2P54317 469 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 ZNF844Q08AG5 666 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 ZNHIT3Q15649 155 aaPredicted RBP13.94□□□□□ -0.18
TRIM28-203ENST00000593582 UGT3A2Q3SY77 523 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 GDF7Q7Z4P5 450 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 PM20D2Q8IYS1 436 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 ULK2Q8IYT8 1036 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 OR2L13Q8N349 312 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 PPCDCQ96CD2 204 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 ELP4Q96EB1 424 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 TSSK3Q96PN8 268 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 TIMP4Q99727 224 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 SPOCK3Q9BQ16 436 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 REEP4Q9H6H4 257 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 SH3BP4Q9P0V3 963 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 RAB21Q9UL25 225 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 MAPRE3Q9UPY8 281 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 SLC6A5Q9Y345 797 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 DCHS2Q6V1P9 2916 aa13.94□□□□□ -0.18
TRIM28-203ENST00000593582 AHRRA9YTQ3 701 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 TMEM114B3SHH9 223 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 CTIFO43310 598 aaKnown RBP13.93□□□□□ -0.18
TRIM28-203ENST00000593582 TSPAN2O60636 221 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 IFI6P09912 130 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 DDX5P17844 614 aaKnown RBP13.93□□□□□ -0.18
TRIM28-203ENST00000593582 MAPK1P28482 360 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 GPC1P35052 558 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 ZFP36L2P47974 494 aaKnown RBP13.93□□□□□ -0.18
TRIM28-203ENST00000593582 PSG6Q00889 435 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 CRYZQ08257 329 aaKnown RBP13.93□□□□□ -0.18
TRIM28-203ENST00000593582 HSPB3Q12988 150 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 SF3B4Q15427 424 aaKnown RBP eCLIP13.93□□□□□ -0.182e-19■■■■□ 19.7
TRIM28-203ENST00000593582 CYP27C1Q4G0S4 372 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 EIPR1Q53HC9 387 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 NHSL2Q5HYW2 709 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 ANKRD26P1Q6NSI1 321 aa13.93□□□□□ -0.18
TRIM28-203ENST00000593582 NUDCD3Q8IVD9 361 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms