RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 MAPK12P53778 367 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 CDH13P55290 713 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 GFRA1P56159 465 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 HMGCS1Q01581 520 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 PLCXD2Q0VAA5 305 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 GALNT1Q10472 559 aaPredicted RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 SF3B4Q15427 424 aaKnown RBP eCLIP10.54□□□□□ -0.721e-6■■■■□ 22
LIG3-207ENST00000586119 TCHHL1Q5QJ38 904 aaPredicted RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 FRG2Q64ET8 278 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 TTC19Q6DKK2 380 aaPredicted RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 SLC30A6Q6NXT4 461 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 SLC48A1Q6P1K1 146 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 C22orf34Q6ZV56 151 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 COMMD6Q7Z4G1 85 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 PRIMA1Q86XR5 153 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 TDRPQ86YL5 185 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 C17orf47Q8NEP4 570 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 UHMK1Q8TAS1 419 aaKnown RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 TMBIM1Q969X1 311 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 MTBPQ96DY7 904 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 ARSGQ96EG1 525 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 CNRIP1Q96F85 164 aaPredicted RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 ZNF681Q96N22 645 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 DACH2Q96NX9 599 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 WFIKKN1Q96NZ8 548 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 FRG2BQ96QU4 278 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 PIGQQ9BRB3 760 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 NTMT1Q9BV86 223 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 ROPN1BQ9BZX4 212 aaPredicted RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 OR2B2Q9GZK3 357 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 ZNF395Q9H8N7 513 aaPredicted RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 ROPN1Q9HAT0 212 aaPredicted RBP10.54□□□□□ -0.72
LIG3-207ENST00000586119 KLRF1Q9NZS2 232 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 CLCF1Q9UBD9 225 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 HEY2Q9UBP5 337 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 PCTPQ9UKL6 214 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 SLC12A4Q9UP95 1085 aa10.54□□□□□ -0.72
LIG3-207ENST00000586119 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 PRAMEF25A6NGN4 478 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 KIAA1324LA8MWY0 1029 aaPredicted RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 POC1B-GALNT4F8VUJ3 575 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 H0YC42 278 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 PLOD2O00469 737 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 ZIC3O60481 467 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 REM1O75628 298 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 CBR3O75828 277 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 TNFSF13O75888 250 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 SNRPAP09012 282 aaKnown RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 NAGAP17050 411 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 CSNK2A2P19784 350 aaPredicted RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 ALDH9A1P49189 494 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 TPD52P55327 224 aaPredicted RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 CLDN15P56746 228 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 CLDN18P56856 261 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 CORO7P57737 925 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 RPP38P78345 283 aaKnown RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 BEND6Q5SZJ8 279 aaPredicted RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 VWA1Q6PCB0 445 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 MILR1Q7Z6M3 343 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 MTERF4Q7Z6M4 381 aaKnown RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 CROCCP2Q86T23 111 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 CCDC116Q8IYX3 515 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 RIBC1Q8N443 379 aaPredicted RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 OR4N2Q8NGD1 307 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 DCAKDQ8WVC6 231 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 KAT2AQ92830 837 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 WNT2BQ93097 391 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 ADOQ96SZ5 270 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 TMEM109Q9BVC6 243 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 BEX4Q9NWD9 120 aaPredicted RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 KLHL28Q9NXS3 571 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 TAS2R10Q9NYW0 307 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 PSMC3IPQ9P2W1 217 aaPredicted RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 ZNF225Q9UK10 706 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 ADAM29Q9UKF5 820 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 TNPO3Q9Y5L0 923 aaKnown RBP10.53□□□□□ -0.72
LIG3-207ENST00000586119 CSPG4Q6UVK1 2322 aa10.53□□□□□ -0.72
LIG3-207ENST00000586119 A0A1W2PNV4 684 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 C1orf226A1L170 272 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 DEFB108AA8MXU0 73 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 CASKO14936 926 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 SMAD7O15105 426 aaKnown RBP10.52□□□□□ -0.73
LIG3-207ENST00000586119 CDH16O75309 829 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 ATP1B1P05026 303 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 SBK3P0C264 359 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 DRD5P21918 477 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 GCAP28676 217 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 CPOXP36551 454 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 PPICP45877 212 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 SERPINB8P50452 374 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 GAS1P54826 345 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 B3GALT5-AS1P59052 145 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 IFFO1Q0D2I5 559 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 IFT88Q13099 833 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 PRSS53Q2L4Q9 553 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 C6orf163Q5TEZ5 329 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 LETMD1Q6P1Q0 360 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 TMEM81Q6P7N7 255 aa10.52□□□□□ -0.73
LIG3-207ENST00000586119 ZNF474Q6S9Z5 364 aaPredicted RBP10.52□□□□□ -0.73
LIG3-207ENST00000586119 NPSR1Q6W5P4 371 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms