RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 IFI6P09912 130 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 KRT20P35900 424 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 EMDP50402 254 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 PRR5P85299 388 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 DUSP8Q13202 625 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 ART3Q13508 389 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 FAM174BQ3ZCQ3 159 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 SPANXN4Q5MJ08 99 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 RTL4Q6ZR62 310 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 DND1Q8IYX4 353 aaKnown RBP15.9■□□□□ 0.14
CLN3-217ENST00000565354 OR2L13Q8N349 312 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 GLB1L3Q8NCI6 653 aaPredicted RBP15.9■□□□□ 0.14
CLN3-217ENST00000565354 MDS2Q8NDY4 140 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 C17orf47Q8NEP4 570 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 NUP43Q8NFH3 380 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 ADIPOR1Q96A54 375 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 NXF5Q9H1B4 397 aaKnown RBP15.9■□□□□ 0.14
CLN3-217ENST00000565354 CCDC134Q9H6E4 229 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 NEUROD4Q9HD90 331 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 EQTNQ9NQ60 294 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 DTX4Q9Y2E6 619 aa15.9■□□□□ 0.14
CLN3-217ENST00000565354 FRG2CA6NGY1 282 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 ANKRD28O15084 1053 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 NEURL1O76050 574 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 RASAL1O95294 804 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 NADKO95544 446 aaPredicted RBP15.89■□□□□ 0.13
CLN3-217ENST00000565354 SOX18P35713 384 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 PPICP45877 212 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 PLCXD2Q0VAA5 305 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 FAM180AQ6UWF9 173 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 GDF7Q7Z4P5 450 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 GALNTL5Q7Z4T8 443 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 PRR22Q8IZ63 422 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 ZNF441Q8N8Z8 693 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 FAM13CQ8NE31 585 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 OR8J2Q8NGG1 315 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 OR4A15Q8NGL6 344 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 RFWD2Q8NHY2 731 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 SPACA9Q96E40 222 aaPredicted RBP15.89■□□□□ 0.13
CLN3-217ENST00000565354 HSPBAP1Q96EW2 488 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 CHMP6Q96FZ7 201 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 LURAP1Q96LR2 239 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 SLX1AQ9BQ83 275 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 HES7Q9BYE0 225 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 TRIM45Q9H8W5 580 aaPredicted RBP15.89■□□□□ 0.13
CLN3-217ENST00000565354 ZCCHC3Q9NUD5 404 aaKnown RBP15.89■□□□□ 0.13
CLN3-217ENST00000565354 ZIM2Q9NZV7 527 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 TRIM33Q9UPN9 1127 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 KLF13Q9Y2Y9 288 aaPredicted RBP15.89■□□□□ 0.13
CLN3-217ENST00000565354 OR10H1Q9Y4A9 318 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 KLF2Q9Y5W3 355 aaPredicted RBP15.89■□□□□ 0.13
CLN3-217ENST00000565354 NPFFR2Q9Y5X5 522 aa15.89■□□□□ 0.13
CLN3-217ENST00000565354 C9JVG2 144 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 RNASET2O00584 256 aaKnown RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 TP53I11O14683 189 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 ACOX3O15254 700 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 NME6O75414 186 aaPredicted RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 CPSF4O95639 269 aaKnown RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 P04436 131 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 NCF2P19878 526 aaPredicted RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 DRD5P21918 477 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 PTGER4P35408 488 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 RPP38P78345 283 aaKnown RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 INAQ16352 499 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 RPUSD3Q6P087 351 aaKnown RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 ANKRD46Q86W74 232 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 SLC44A2Q8IWA5 706 aaPredicted RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 OR5M3Q8NGP4 307 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 RELTQ969Z4 430 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 SCMH1Q96GD3 660 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 SGCZQ96LD1 299 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 MS4A4EQ96PG1 132 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 Q9N2J8 555 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 FAM120CQ9NX05 1096 aaKnown RBP15.88■□□□□ 0.13
CLN3-217ENST00000565354 PCDHGB6Q9Y5F9 930 aa15.88■□□□□ 0.13
CLN3-217ENST00000565354 PRSS51A0A1B0GVH4 220 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 TTC36A6NLP5 189 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 KLRC4-KLRK1H3BQV0 150 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 NME2P1O60361 137 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 ZNF354AO60765 605 aaPredicted RBP15.87■□□□□ 0.13
CLN3-217ENST00000565354 FBXO45P0C2W1 286 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 NME2P22392 152 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 IL12BP29460 328 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 CCT3P49368 545 aaKnown RBP15.87■□□□□ 0.13
CLN3-217ENST00000565354 PRIM2P49643 509 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 DGKQP52824 942 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 ARFIP2P53365 341 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 PSPHP78330 225 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 SF3A3Q12874 501 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLN3-217ENST00000565354 TP53BP2Q13625 1128 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 VPS26BQ4G0F5 336 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 BHLHB9Q6PI77 547 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 PAOXQ6QHF9 649 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 TMEM64Q6YI46 380 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 MDGA2Q7Z553 956 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 CLECL1Q8IZS7 167 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 GOLM1Q8NBJ4 401 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 PSD4Q8NDX1 1056 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 OR56A1Q8NGH5 318 aa15.87■□□□□ 0.13
CLN3-217ENST00000565354 STON2Q8WXE9 905 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms