RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ALPK1Q96QP1 1244 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 G6PC3Q9BUM1 346 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 SFXN3Q9BWM7 321 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 ACPTQ9BZG2 426 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 TMEM216Q9P0N5 145 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 DLGAP4Q9Y2H0 992 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 MRPS18CQ9Y3D5 142 aaKnown RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 MPDZO75970 2070 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 TSPAN2O60636 221 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 ULK1O75385 1050 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 REM1O75628 298 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 SUPT7LO94864 414 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 GOSR1O95249 250 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 IL3P08700 152 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 ABHD2P08910 425 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 IMPDH1P20839 514 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 SRD5A2P31213 254 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 FOXF2Q12947 444 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 LGSNQ5TDP6 509 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 GALNT18Q6P9A2 607 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 ENPP6Q6UWR7 440 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 PAMR1Q6UXH9 720 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 GPRIN3Q6ZVF9 776 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 CAMKMTQ7Z624 323 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 OR14L1PQ8NHC6 308 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 LINC01560Q8TB33 94 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 METTL6Q8TCB7 284 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 MTBPQ96DY7 904 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 TMEM237Q96Q45 408 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 TM9SF2Q99805 663 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 SIRT5Q9NXA8 310 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 TAS2R10Q9NYW0 307 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 CLCF1Q9UBD9 225 aa15.55■□□□□ 0.08
CLN3-216ENST00000565316 EXOC1LA0A1B0GW35 172 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 SERTM1A2A2V5 107 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 EEF1E1-BLOC1S5C9J1V9 151 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 EEF1E1O43324 174 aaKnown RBP15.54■□□□□ 0.08
CLN3-216ENST00000565316 PCDH7O60245 1069 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 PLOD3O60568 738 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 ESRRBO95718 433 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 CTAGE8P0CG41 777 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 KLK2P20151 261 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 ATP5F1P24539 256 aaPredicted RBP15.54■□□□□ 0.08
CLN3-216ENST00000565316 LHX2P50458 406 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 DGKQP52824 942 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 PRKAA2P54646 552 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 GAS1P54826 345 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 CORO7P57737 925 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 EFR3AQ14156 821 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 SPIN4Q56A73 249 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 TEX35Q5T0J7 233 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 NPSR1Q6W5P4 371 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 CTAGE4Q8IX94 777 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 OR9A2Q8NGT5 310 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 C16orf78Q8WTQ4 265 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 KAT2AQ92830 837 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 C16orf45Q96MC5 204 aaPredicted RBP15.54■□□□□ 0.08
CLN3-216ENST00000565316 ADOQ96SZ5 270 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 SHCBP1LQ9BZQ2 653 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 PLEKHF2Q9H8W4 249 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 ANKRA2Q9H9E1 313 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 FBXL2Q9UKC9 423 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 WIF1Q9Y5W5 379 aa15.54■□□□□ 0.08
CLN3-216ENST00000565316 CLCA1A8K7I4 914 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 B4DXG7 233 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 H0Y3Z8 333 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 ZIC3O60481 467 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 ERN1O75460 977 aaKnown RBP15.53■□□□□ 0.08
CLN3-216ENST00000565316 ATE1O95260 518 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 HTR6P50406 440 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 PNLIPRP2P54317 469 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 CLDN18P56856 261 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 LCP2Q13094 533 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 HEPACAMQ14CZ8 416 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 ERCC6LQ2NKX8 1250 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 AAGABQ6PD74 315 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 LARP4Q71RC2 724 aaKnown RBP eCLIP15.53■□□□□ 0.08
CLN3-216ENST00000565316 IFNEQ86WN2 208 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 MNS1Q8NEH6 495 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 RDH11Q8TC12 318 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 EXOSC8Q96B26 276 aaKnown RBP15.53■□□□□ 0.08
CLN3-216ENST00000565316 L3HYPDHQ96EM0 354 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 DTNBP1Q96EV8 351 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 APIPQ96GX9 242 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 POM121Q96HA1 1249 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 DACH2Q96NX9 599 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 FOLH1BQ9HBA9 442 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 PFDN4Q9NQP4 134 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 SLC35C2Q9NQQ7 365 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 DLL4Q9NR61 685 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 STK38LQ9Y2H1 464 aa15.53■□□□□ 0.08
CLN3-216ENST00000565316 GNG14A0A1W2PPG7 69 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 NME6O75414 186 aaPredicted RBP15.52■□□□□ 0.08
CLN3-216ENST00000565316 RAF1P04049 648 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 ENO1P06733 434 aaKnown RBP15.52■□□□□ 0.08
CLN3-216ENST00000565316 ZNF708P17019 499 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 CHMP24386 653 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 HMOX2P30519 316 aa15.52■□□□□ 0.08
CLN3-216ENST00000565316 TIA1P31483 386 aaKnown RBP eCLIP15.52■□□□□ 0.08
CLN3-216ENST00000565316 GSTM5P46439 218 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms