RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 GDAP2Q9NXN4 497 aa3.75□□□□□ -1.81
LINC00560-201ENST00000564593 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.75□□□□□ -1.81
LINC00560-201ENST00000564593 EIF2AK4Q9P2K8 1649 aaKnown RBP3.75□□□□□ -1.81
LINC00560-201ENST00000564593 ROCK2O75116 1388 aaKnown RBP3.75□□□□□ -1.81
LINC00560-201ENST00000564593 NUP160Q12769 1436 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 TEX14Q8IWB6 1497 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 CEP170Q5SW79 1584 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 FAM230AA0A1W2PPH8 454 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 FOXI3A8MTJ6 420 aaPredicted RBP3.74□□□□□ -1.81
LINC00560-201ENST00000564593 H3BMH7 237 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 GALR3O60755 368 aaPredicted RBP3.74□□□□□ -1.81
LINC00560-201ENST00000564593 GOT2P00505 430 aaKnown RBP3.74□□□□□ -1.81
LINC00560-201ENST00000564593 HOXD4P09016 255 aaPredicted RBP3.74□□□□□ -1.81
LINC00560-201ENST00000564593 RRASP10301 218 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 IL4RP24394 825 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 POLR2FP61218 127 aaKnown RBP3.74□□□□□ -1.81
LINC00560-201ENST00000564593 CNPY1Q3B7I2 92 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 ACER2Q5QJU3 275 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 FAM219BQ5XKK7 198 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 LEMD1Q68G75 181 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 REG3GQ6UW15 175 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 FAM43BQ6ZT52 329 aaPredicted RBP3.74□□□□□ -1.81
LINC00560-201ENST00000564593 PAQR9Q6ZVX9 377 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 VPS36Q86VN1 386 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 ERC1Q8IUD2 1116 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 CERS5Q8N5B7 392 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 ARFGAP2Q8N6H7 521 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 BCORP1Q8N888 145 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 CSNK1G2-AS1Q8NCQ2 148 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 OR4F17Q8NGA8 305 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 OR4F4Q96R69 305 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 FAM173AQ9BQD7 235 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 UBXN6Q9BZV1 441 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 TSPY26PQ9H489 355 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 ACTR8Q9H981 624 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 P2RX2Q9UBL9 471 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 PURGQ9UJV8 347 aaKnown RBP3.74□□□□□ -1.81
LINC00560-201ENST00000564593 MGAT4BQ9UQ53 548 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 AURKCQ9UQB9 309 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 NCAPD2Q15021 1401 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 CNTLNQ9NXG0 1405 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 ABCA8O94911 1581 aa3.74□□□□□ -1.81
LINC00560-201ENST00000564593 E9PMD0 336 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 SGK494L7N484 410 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 SCGB2A1O75556 95 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 TOM1L1O75674 476 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 NDUFA7O95182 113 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 PTMAP06454 111 aaKnown RBP3.73□□□□□ -1.81
LINC00560-201ENST00000564593 SLC35G4P0C7Q5 338 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 TSPAN8P19075 237 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 SHC1P29353 583 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 RFC2P35250 354 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 MFAP2P55001 183 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 HAND2P61296 217 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 CYLC2Q14093 348 aaPredicted RBP3.73□□□□□ -1.81
LINC00560-201ENST00000564593 RFTN1Q14699 578 aaPredicted RBP3.73□□□□□ -1.81
LINC00560-201ENST00000564593 CD226Q15762 336 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 SEL1L3Q68CR1 1132 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 ADAMTSL5Q6ZMM2 481 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 STOX1Q6ZVD7 989 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 SELENOMQ8WWX9 145 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 DLX4Q92988 240 aaPredicted RBP3.73□□□□□ -1.81
LINC00560-201ENST00000564593 TTYH2Q9BSA4 534 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 PNNQ9H307 717 aaKnown RBP3.73□□□□□ -1.81
LINC00560-201ENST00000564593 ECT2Q9H8V3 914 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 VAT1LQ9HCJ6 419 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 ESM1Q9NQ30 184 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 GPR83Q9NYM4 423 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 RCOR3Q9P2K3 495 aaPredicted RBP3.73□□□□□ -1.81
LINC00560-201ENST00000564593 ANKMY1Q9P2S6 941 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 MLXQ9UH92 298 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 KTN1Q86UP2 1357 aaKnown RBP3.73□□□□□ -1.81
LINC00560-201ENST00000564593 GON4LQ3T8J9 2241 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 PLXNC1O60486 1568 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 MAST1Q9Y2H9 1570 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 LAMC1P11047 1609 aa3.73□□□□□ -1.81
LINC00560-201ENST00000564593 LRIT2A6NDA9 550 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ANKRD30BLA7E2S9 258 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 PDXKO00764 312 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 IGSF6O95976 241 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 MELTFP08582 738 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 CAPN2P17655 700 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 BRCC3P46736 316 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 TRA2BP62995 288 aaKnown RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 SCGB2A2Q13296 93 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ABRAXAS2Q15018 415 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 C14orf28Q4W4Y0 310 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 HSP90AA5PQ58FG0 334 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 BEND6Q5SZJ8 279 aaPredicted RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 LINC00242Q5T6M2 205 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 TSEN54Q7Z6J9 526 aaKnown RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 MISPQ8IVT2 679 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 ARL14Q8N4G2 192 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 SUMF1Q8NBK3 374 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 FLVCR1-AS1Q8TAF5 88 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 TOMM40LQ969M1 308 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 MCHR2Q969V1 340 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 C16orf45Q96MC5 204 aaPredicted RBP3.72□□□□□ -1.81
LINC00560-201ENST00000564593 CCSER1Q9C0I3 900 aa3.72□□□□□ -1.81
LINC00560-201ENST00000564593 POLE3Q9NRF9 147 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms