RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 C15orf38-AP3S2A0A0A6YYH1 394 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 LSM1O15116 133 aaKnown RBP14.32□□□□□ -0.12
VPS39-203ENST00000561797 COQ9O75208 318 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 IL12BP29460 328 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 ARRB2P32121 409 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 KRT20P35900 424 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 PTGDSP41222 190 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 HSPB3Q12988 150 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 CEP85LQ5SZL2 805 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 SLC30A6Q6NXT4 461 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 RNF165Q6ZSG1 346 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 LARP4Q71RC2 724 aaKnown RBP eCLIP14.32□□□□□ -0.12
VPS39-203ENST00000561797 ZNF551Q7Z340 670 aaPredicted RBP14.32□□□□□ -0.12
VPS39-203ENST00000561797 CCDC71Q8IV32 467 aaPredicted RBP14.32□□□□□ -0.12
VPS39-203ENST00000561797 NUDCD3Q8IVD9 361 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 OR4N2Q8NGD1 307 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 OR10Q1Q8NGQ4 319 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 OR1J4Q8NGS1 313 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 PPP1R14CQ8TAE6 165 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 PKNOX2Q96KN3 472 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 FCRL1Q96LA6 429 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 ADOQ96SZ5 270 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 CCT7Q99832 543 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 SH3BP4Q9P0V3 963 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 ZDHHC2Q9UIJ5 367 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 C15orf41Q9Y2V0 281 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 OR10H1Q9Y4A9 318 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 FAM215AQ9Y5M1 114 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 CRYBG3Q68DQ2 2970 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 MED12Q93074 2177 aa14.32□□□□□ -0.12
VPS39-203ENST00000561797 MAST4O15021 2626 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 A0A087WV62 115 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 PRAMEF25A6NGN4 478 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 OR6C70A6NIJ9 312 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 UPK1AO00322 258 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 PDPK1O15530 556 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 TSPAN2O60636 221 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 WDR1O75083 606 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 PEX11AO75192 247 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 SKAP2O75563 359 aaPredicted RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 PRF1P14222 555 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 COX6B1P14854 86 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 PTPN6P29350 595 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 ETV4P43268 484 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 CDK9P50750 372 aaKnown RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 EIPR1Q53HC9 387 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 ZNF385BQ569K4 471 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 WIPI1Q5MNZ9 446 aaPredicted RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 C1orf185Q5T7R7 199 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 TIGD3Q6B0B8 471 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 RTL6Q6ICC9 239 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 TMEM81Q6P7N7 255 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 ACAD11Q709F0 780 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 WDR53Q7Z5U6 358 aaPredicted RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 EXOC3L1Q86VI1 746 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 HOMEZQ8IX15 550 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 ASB5Q8WWX0 329 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 CIDECQ96AQ7 238 aaPredicted RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 EFHD2Q96C19 240 aaPredicted RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 PPCDCQ96CD2 204 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 NTNG2Q96CW9 530 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 TMCO6Q96DC7 493 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 ELP4Q96EB1 424 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 ZIM3Q96PE6 472 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 TTYH2Q9BSA4 534 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 UBQLN3Q9H347 655 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 REEP4Q9H6H4 257 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 RUBCNLQ9H714 662 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 DDX18Q9NVP1 670 aaKnown RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 C19orf53Q9UNZ5 99 aaPredicted RBP14.31□□□□□ -0.12
VPS39-203ENST00000561797 MAPRE3Q9UPY8 281 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 SLC6A5Q9Y345 797 aa14.31□□□□□ -0.12
VPS39-203ENST00000561797 UNC79Q9P2D8 2635 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 PKDREJQ9NTG1 2253 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 NKX2-6A6NCS4 301 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 FAM90A27PA6NNH2 459 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 PLOD2O00469 737 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 ABCB7O75027 752 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 LYPLA1O75608 230 aaPredicted RBP14.3□□□□□ -0.12
VPS39-203ENST00000561797 SLITRK5O94991 958 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 HPNP05981 417 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 GLI4P10075 376 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 BCKDHAP12694 445 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 ELAVL4P26378 380 aaKnown RBP14.3□□□□□ -0.12
VPS39-203ENST00000561797 GPC1P35052 558 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 SERPINB5P36952 375 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 KIR3DL1P43629 444 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 SERPINB4P48594 390 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 PNLIPRP2P54317 469 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 PSG6Q00889 435 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 SNTA1Q13424 505 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 B3GNT6Q6ZMB0 384 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 YRDCQ86U90 279 aaKnown RBP14.3□□□□□ -0.12
VPS39-203ENST00000561797 SLC35A4Q96G79 324 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 PPP3R2Q96LZ3 170 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 C3orf30Q96M34 536 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 UCK2Q9BZX2 261 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 KCNK9Q9NPC2 374 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 SERHLQ9NQF3 203 aa14.3□□□□□ -0.12
VPS39-203ENST00000561797 TMED5Q9Y3A6 229 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms