RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 ARHGDIGQ99819 225 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 PELOQ9BRX2 385 aaKnown RBP12.04□□□□□ -0.48
SNX1-211ENST00000560829 FUZQ9BT04 418 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 ALOXE3Q9BYJ1 711 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 QRSL1Q9H0R6 528 aaKnown RBP12.04□□□□□ -0.48
SNX1-211ENST00000560829 RIBC2Q9H4K1 309 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 FSCN3Q9NQT6 498 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 A4GNTQ9UNA3 340 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 CDC14AQ9UNH5 594 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 IFT52Q9Y366 437 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 WDR45Q9Y484 360 aa12.04□□□□□ -0.48
SNX1-211ENST00000560829 THADAQ6YHU6 1953 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 A0A087WXM4 84 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 M0R3H8 397 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 OXSR1O95747 527 aaPredicted RBP12.03□□□□□ -0.48
SNX1-211ENST00000560829 CFIP05156 583 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 H1F0P07305 194 aaKnown RBP12.03□□□□□ -0.48
SNX1-211ENST00000560829 THBS1P07996 1170 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 FUT4P22083 530 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 NR1H2P55055 460 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 BTG2P78543 158 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 CD47Q08722 323 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 SERTAD2Q14140 314 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 EXOSC7Q15024 291 aaKnown RBP12.03□□□□□ -0.48
SNX1-211ENST00000560829 ZNF528Q3MIS6 628 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 RBM48Q5RL73 367 aaKnown RBP12.03□□□□□ -0.48
SNX1-211ENST00000560829 SNAP47Q5SQN1 464 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 PERM1Q5SV97 790 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 SLC23A3Q6PIS1 610 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 DEF8Q6ZN54 512 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 TTLL10Q6ZVT0 673 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 GPR135Q8IZ08 494 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 PARP8Q8N3A8 854 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 SETD9Q8NE22 299 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 OR52R1Q8NGF1 315 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 OR6T1Q8NGN1 323 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 ADAMTS16Q8TE57 1224 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 NR4A3Q92570 626 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 HDAC2Q92769 488 aaKnown RBP12.03□□□□□ -0.48
SNX1-211ENST00000560829 RIT1Q92963 219 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 NAT6Q93015 286 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 ZG16BQ96DA0 208 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 LMF2Q9BU23 707 aaKnown RBP12.03□□□□□ -0.48
SNX1-211ENST00000560829 ING2Q9H160 280 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 POLE3Q9NRF9 147 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 PAPOLBQ9NRJ5 636 aaKnown RBP12.03□□□□□ -0.48
SNX1-211ENST00000560829 LANCL2Q9NS86 450 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 RLIMQ9NVW2 624 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 NDUFA13Q9P0J0 144 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 SERTAD3Q9UJW9 196 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 GMEB2Q9UKD1 530 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 SLC6A14Q9UN76 642 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 POFUT2Q9Y2G5 429 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 CHST2Q9Y4C5 530 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 MMACHCQ9Y4U1 282 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 MUC3AQ02505 3323 aa12.03□□□□□ -0.48
SNX1-211ENST00000560829 A0A1W2PRQ8 180 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 CPNE6O95741 557 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 CER1O95813 267 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 ATP6V1B1P15313 513 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 RPS4Y1P22090 263 aaKnown RBP12.02□□□□□ -0.48
SNX1-211ENST00000560829 ELAVL4P26378 380 aaKnown RBP12.02□□□□□ -0.48
SNX1-211ENST00000560829 EMDP50402 254 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 HLCSP50747 726 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 TPD52P55327 224 aaPredicted RBP12.02□□□□□ -0.48
SNX1-211ENST00000560829 RAPSNQ13702 412 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 DSG2Q14126 1118 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 DGCR6Q14129 220 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 ERV3-1Q14264 604 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 NPTX1Q15818 432 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 DCST2Q5T1A1 773 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 RNF220Q5VTB9 566 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 FOXB2Q5VYV0 432 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 ZNF574Q6ZN55 896 aaPredicted RBP12.02□□□□□ -0.48
SNX1-211ENST00000560829 TSPYL5Q86VY4 417 aaPredicted RBP12.02□□□□□ -0.48
SNX1-211ENST00000560829 VRK2Q86Y07 508 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 METTL27Q8N6F8 245 aaPredicted RBP12.02□□□□□ -0.48
SNX1-211ENST00000560829 ZBTB44Q8NCP5 570 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 C7orf57Q8NEG2 295 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 OR52P1PQ8NH57 321 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 PRRC1Q96M27 445 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 DGAT2Q96PD7 388 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 DPYSL5Q9BPU6 564 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 NDC1Q9BTX1 674 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 RHCGQ9UBD6 479 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 MKLN1Q9UL63 735 aa12.02□□□□□ -0.48
SNX1-211ENST00000560829 TRBV4-1A0A0J9YWV2 114 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 SMIM31A0A1B0GVY4 71 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 A0A1W2PQM1 296 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 AGAP5A6NIR3 686 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 A8MU76 341 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 FAAHO00519 579 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 DSCR3O14972 297 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 HYAL3O43820 417 aaPredicted RBP12.02□□□□□ -0.49
SNX1-211ENST00000560829 KIAA0513O60268 411 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 STX11O75558 287 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 CDC123O75794 336 aaPredicted RBP12.02□□□□□ -0.49
SNX1-211ENST00000560829 IL1RL1Q01638 556 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 FUT7Q11130 342 aa12.02□□□□□ -0.49
SNX1-211ENST00000560829 CTU2Q2VPK5 515 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms