RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CCDC106Q9BWC9 280 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 LUZP4Q9P127 313 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 MAP10Q9P2G4 905 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 VPS4AQ9UN37 437 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 NPFFR2Q9Y5X5 522 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 CAPN7Q9Y6W3 813 aa20.07■□□□□ 0.8
SNX1-210ENST00000560260 A8MVJ9 347 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 FBP2O00757 339 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 ACOX3O15254 700 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 KALRNO60229 2985 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 SNRPB2P08579 225 aaKnown RBP20.06■□□□□ 0.8
SNX1-210ENST00000560260 CASRP41180 1078 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 PRIM2P49643 509 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 FBXW4P57775 412 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 PLCXD2Q0VAA5 305 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 SOWAHCQ53LP3 525 aaPredicted RBP20.06■□□□□ 0.8
SNX1-210ENST00000560260 CDC73Q6P1J9 531 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 OPN5Q6U736 354 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 ZNF621Q6ZSS3 439 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 MDGA2Q7Z553 956 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 SLC34A3Q8N130 599 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 Q8NA96 180 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 LSM14AQ8ND56 463 aaKnown RBP20.06■□□□□ 0.8
SNX1-210ENST00000560260 OR5D16Q8NGK9 328 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 SLC39A7Q92504 469 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 PIK3R3Q92569 461 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 SLC9A6Q92581 669 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 TMBIM1Q969X1 311 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 NEURL3Q96EH8 262 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 HSPBAP1Q96EW2 488 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 AURKBQ96GD4 344 aaPredicted RBP20.06■□□□□ 0.8
SNX1-210ENST00000560260 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.06■□□□□ 0.8
SNX1-210ENST00000560260 HPF1Q9NWY4 346 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 SLC25A37Q9NYZ2 338 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 ARL2BPQ9Y2Y0 163 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 CHD6Q8TD26 2715 aa20.06■□□□□ 0.8
SNX1-210ENST00000560260 A0A096LPI6 279 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 TRBV5-3A0A0A0MS03 114 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 CCDC22O60826 627 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 ZCCHC18P0CG32 403 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 GABRA3P34903 492 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 TRPC1P48995 793 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 PLEKHN1Q494U1 663 aaPredicted RBP20.05■□□□□ 0.8
SNX1-210ENST00000560260 LRIF1Q5T3J3 769 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 SNX32Q86XE0 403 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 GPALPP1Q8IXQ4 340 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 OR10G3Q8NGC4 313 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 ZFP90Q8TF47 636 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 JADE3Q92613 823 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 OR7D2Q96RA2 312 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 ACTRT3Q9BYD9 372 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 SH2D2AQ9NP31 389 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 KCNE3Q9Y6H6 103 aa20.05■□□□□ 0.8
SNX1-210ENST00000560260 CDK2AP1O14519 115 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 TSPAN2O60636 221 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 PPM1BO75688 479 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 SLC25A12O75746 678 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 IGKV1D-16P01601 117 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 PRB1P04280 392 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 ADSLP30566 484 aaPredicted RBP20.04■□□□□ 0.8
SNX1-210ENST00000560260 MVDP53602 400 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 NRG3P56975 720 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 ZNF169Q14929 603 aaPredicted RBP20.04■□□□□ 0.8
SNX1-210ENST00000560260 ZNHIT3Q15649 155 aaPredicted RBP20.04■□□□□ 0.8
SNX1-210ENST00000560260 NTRK2Q16620 822 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 ZCCHC12Q6PEW1 402 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 PNPT1Q8TCS8 783 aaKnown RBP20.04■□□□□ 0.8
SNX1-210ENST00000560260 GPR151Q8TDV0 419 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 TSPEARQ8WU66 669 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 CDS1Q92903 461 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 HGDQ93099 445 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 SLC35A4Q96G79 324 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 SCMH1Q96GD3 660 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 Q9N2J8 555 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 MRGBPQ9NV56 204 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 LEF1Q9UJU2 399 aaPredicted RBP20.04■□□□□ 0.8
SNX1-210ENST00000560260 B3GNT3Q9Y2A9 372 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 NDUFAF1Q9Y375 327 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 OR10H1Q9Y4A9 318 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 PCDHB14Q9Y5E9 798 aa20.04■□□□□ 0.8
SNX1-210ENST00000560260 TRAV17A0A0B4J275 112 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 TTC36A6NLP5 189 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 SLC22A2O15244 555 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 UGT2B11O75310 529 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 ALOX5P09917 674 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 CCL3P10147 92 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 MATN1P21941 496 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 CHI3L1P36222 383 aaPredicted RBP20.03■□□□□ 0.8
SNX1-210ENST00000560260 KLRB1Q12918 225 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 NFATC3Q12968 1075 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 COX20Q5RI15 118 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 DLEU7Q6UYE1 221 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 TRIML2Q8N7C3 387 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 POU5F2Q8N7G0 328 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 BCORP1Q8N888 145 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 OR5M3Q8NGP4 307 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 MIPOL1Q8TD10 442 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 PNPLA2Q96AD5 504 aa20.03■□□□□ 0.8
SNX1-210ENST00000560260 EFHD2Q96C19 240 aaPredicted RBP20.03■□□□□ 0.8
SNX1-210ENST00000560260 RMND5BQ96G75 393 aaPredicted RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms