RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 B4GALT7Q9UBV7 327 aa11.47□□□□□ -0.57
SLIRP-209ENST00000557342 MARCOQ9UEW3 520 aaPredicted RBP11.47□□□□□ -0.57
SLIRP-209ENST00000557342 MRTO4Q9UKD2 239 aaKnown RBP11.47□□□□□ -0.57
SLIRP-209ENST00000557342 FREM3P0C091 2139 aa11.47□□□□□ -0.57
SLIRP-209ENST00000557342 NUP214P35658 2090 aaPredicted RBP11.47□□□□□ -0.57
SLIRP-209ENST00000557342 FAM166BA8MTA8 275 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SDHDO14521 159 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 CDC40O60508 579 aaKnown RBP eCLIP11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SLC19A2O60779 497 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SEMA7AO75326 666 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 LAMP1P11279 417 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 ABOP16442 354 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 CASP3P42574 277 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 MASP1P48740 699 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 CDK9P50750 372 aaKnown RBP11.46□□□□□ -0.57
SLIRP-209ENST00000557342 CLNS1AP54105 237 aaKnown RBP11.46□□□□□ -0.57
SLIRP-209ENST00000557342 PNLIPRP2P54317 469 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 PSMD4P55036 377 aaKnown RBP11.46□□□□□ -0.57
SLIRP-209ENST00000557342 DIO3P55073 304 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 CORO7P57737 925 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 PSG6Q00889 435 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SNTA1Q13424 505 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SLC10A1Q14973 349 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 VPS26BQ4G0F5 336 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 CMPK2Q5EBM0 449 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SLC30A6Q6NXT4 461 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 ZCCHC12Q6PEW1 402 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 NPSR1Q6W5P4 371 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SPPL2CQ8IUH8 684 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 TMEM251Q8N6I4 163 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 KRTCAP2Q8N6L1 136 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 NUP43Q8NFH3 380 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 OR52N2Q8NGI0 321 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SSC4DQ8WTU2 575 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 HGDQ93099 445 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 RELTQ969Z4 430 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 SLC35A4Q96G79 324 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 TMEM41AQ96HV5 264 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 JSRP1Q96MG2 331 aaPredicted RBP11.46□□□□□ -0.57
SLIRP-209ENST00000557342 C7orf26Q96N11 449 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 RILPQ96NA2 401 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 MS4A4EQ96PG1 132 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 DUSP26Q9BV47 211 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 DEFB127Q9H1M4 99 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 ZDHHC11Q9H8X9 412 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 PROK2Q9HC23 129 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 NEUROD4Q9HD90 331 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 PLSCR2Q9NRY7 297 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 INTS9Q9NV88 658 aaKnown RBP11.46□□□□□ -0.57
SLIRP-209ENST00000557342 QPCTLQ9NXS2 382 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 ERRFI1Q9UJM3 462 aaPredicted RBP11.46□□□□□ -0.57
SLIRP-209ENST00000557342 ZNF835Q9Y2P0 537 aa11.46□□□□□ -0.57
SLIRP-209ENST00000557342 UBR5O95071 2799 aaPredicted RBP11.45□□□□□ -0.58
SLIRP-209ENST00000557342 RP1L1Q8IWN7 2480 aaPredicted RBP11.45□□□□□ -0.58
SLIRP-209ENST00000557342 TRGV8A0A0C4DH27 118 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 PRRG2O14669 202 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 LRRTM2O43300 516 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 TSPAN2O60636 221 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 UGT2B11O75310 529 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 TRIM3O75382 744 aaPredicted RBP11.45□□□□□ -0.58
SLIRP-209ENST00000557342 NME6O75414 186 aaPredicted RBP11.45□□□□□ -0.58
SLIRP-209ENST00000557342 WISP2O76076 250 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 ELAVL4P26378 380 aaKnown RBP11.45□□□□□ -0.58
SLIRP-209ENST00000557342 PTGS2P35354 604 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 CA7P43166 264 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 PRIM2P49643 509 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 PRKAG1P54619 331 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 DECR1Q16698 335 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 DPY19L1Q2PZI1 675 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 PGS1Q32NB8 556 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 MTFR2Q6P444 385 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 ARHGAP11AQ6P4F7 1023 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 Q6ZPB1 254 aaPredicted RBP11.45□□□□□ -0.58
SLIRP-209ENST00000557342 SZRD1Q7Z422 152 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 EID3Q8N140 333 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 CDRT4Q8N9R6 151 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 OR8J2Q8NGG1 315 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 PSMA8Q8TAA3 256 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 MOAP1Q96BY2 351 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 DTNBP1Q96EV8 351 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 NODALQ96S42 347 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 ADOQ96SZ5 270 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 OSBPL11Q9BXB4 747 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 KLRF1Q9NZS2 232 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 SUCOQ9UBS9 1254 aaKnown RBP11.45□□□□□ -0.58
SLIRP-209ENST00000557342 CBLCQ9ULV8 474 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 MYO18BQ8IUG5 2567 aa11.45□□□□□ -0.58
SLIRP-209ENST00000557342 POLEQ07864 2286 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 HIVEP3Q5T1R4 2406 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 A0A1B0GTH9 108 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 OR14I1A6ND48 311 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 PRAMEF25A6NGN4 478 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 CFLARO15519 480 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 SUSD5O60279 629 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 SOX30O94993 753 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 KCNH1O95259 989 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 C6orf47O95873 294 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 IGHG3P01860 377 aa11.44□□□□□ -0.58
SLIRP-209ENST00000557342 EFNA1P20827 205 aaPredicted RBP11.44□□□□□ -0.58
SLIRP-209ENST00000557342 EPHA3P29320 983 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms