RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 SUN3Q8TAQ9 357 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 FATE1Q969F0 183 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF566Q969W8 418 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 ZC3H10Q96K80 434 aaKnown RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 HRASLS5Q96KN8 279 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 SPACA7Q96KW9 195 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 GPER1Q99527 375 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF436Q9C0F3 470 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 C20orf85Q9H1P6 137 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 SRMSQ9H3Y6 488 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 FN3KQ9H479 309 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 SLC6A13Q9NSD5 602 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 CNOT2Q9NZN8 540 aaKnown RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 LHX3Q9UBR4 397 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF639Q9UID6 485 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 RASD1Q9Y272 281 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 H7C0S8 307 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 EIF3FO00303 357 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 STK25O00506 426 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PRKRAO75569 313 aaKnown RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 GKN3PP0CG01 181 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 STX12Q86Y82 276 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PDZD9Q8IXQ8 264 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 OR52E2Q8NGJ4 325 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 CD300LFQ8TDQ1 290 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 UBTD2Q8WUN7 234 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 APH1BQ8WW43 257 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 NEIL2Q969S2 332 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 MYEOVQ96EZ4 313 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 CNN2Q99439 309 aaKnown RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 SLC6A7Q99884 636 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 GABARAPL3Q9BY60 117 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 IL26Q9NPH9 171 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PRDM9Q9NQV7 894 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 LAMP5Q9UJQ1 280 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 FBXO10Q9UK96 956 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PCDHGB7Q9Y5F8 929 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 COLEC10Q9Y6Z7 277 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 TRBV2A0A0J9YWF9 115 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 TARM1B6A8C7 271 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 M0R082 166 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PRODHO43272 600 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 POP7O75817 140 aaKnown RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 RCBTB2O95199 551 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 ARSBP15848 533 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 FLT3LGP49771 235 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 RRAS2P62070 204 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PCGF3Q3KNV8 242 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PYCR3Q53H96 274 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 SPRYD7Q5W111 196 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 KLHL24Q6TFL4 600 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 METTL27Q8N6F8 245 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 GATSQ8NAP1 163 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 CHST14Q8NCH0 376 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 ZBTB44Q8NCP5 570 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 OR2L3Q8NG85 312 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 PPP1R14AQ96A00 147 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 SLC25A46Q96AG3 418 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 TSNAXQ99598 290 aaKnown RBP4.72□□□□□ -1.65
SYNE2-223ENST00000557005 CDCP1Q9H5V8 836 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 NARFLQ9H6Q4 476 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 WDR26Q9H7D7 661 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 RDH14Q9HBH5 336 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 GRHPRQ9UBQ7 328 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 POLHQ9Y253 713 aa4.72□□□□□ -1.65
SYNE2-223ENST00000557005 TRAV27A0A087WT01 109 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 SMAD6O43541 496 aaKnown RBP4.71□□□□□ -1.65
SYNE2-223ENST00000557005 PI15O43692 258 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 CACNG3O60359 315 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 FMO6PO60774 539 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 PRH1P02810 166 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 ZNF865P0CJ78 1059 aaPredicted RBP4.71□□□□□ -1.65
SYNE2-223ENST00000557005 GIMD1P0DJR0 217 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 HSD3B1P14060 373 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 AKR1C4P17516 323 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 CSNK2A2P19784 350 aaPredicted RBP4.71□□□□□ -1.65
SYNE2-223ENST00000557005 M6PRP20645 277 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 ELAVL4P26378 380 aaKnown RBP4.71□□□□□ -1.65
SYNE2-223ENST00000557005 APEX1P27695 318 aaKnown RBP4.71□□□□□ -1.65
SYNE2-223ENST00000557005 CD34P28906 385 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 SLC6A6P31641 620 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 CTNNB1P35222 781 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 MASP1P48740 699 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 CLCNKAP51800 687 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 CTBP2P56545 445 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 WDR5P61964 334 aaKnown RBP4.71□□□□□ -1.65
SYNE2-223ENST00000557005 HYAL2Q12891 473 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 P2RY14Q15391 338 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 MAPK14Q16539 360 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 ESCO2Q56NI9 601 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 BEX5Q5H9J7 111 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 FAM76BQ5HYJ3 339 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 ELP2Q6IA86 826 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 RFLNAQ6ZTI6 216 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 SPAG16Q8N0X2 631 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 DCAF4L2Q8NA75 395 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 LCN9Q8WX39 176 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 THAP4Q8WY91 577 aa4.71□□□□□ -1.65
SYNE2-223ENST00000557005 RBPMSQ93062 196 aaKnown RBP4.71□□□□□ -1.65
SYNE2-223ENST00000557005 NT5C3BQ969T7 300 aa4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms