RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-205	ENST00000556096	TOP3A	Q13472	1001 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SQSTM1	Q13501	440 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	GANAB	Q14697	944 aa	Known RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	DUSP5	Q16690	384 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	HLA-B	Q31612	363 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	AMZ1	Q400G9	498 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	ZNF311	Q5JNZ3	666 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PLA2G2C	Q5R387	149 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	C6orf141	Q5SZD1	244 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	FOXB2	Q5VYV0	432 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	DHRS4L2	Q6PKH6	230 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	MED25	Q71SY5	747 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	OLIG3	Q7RTU3	272 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	RABEPK	Q7Z6M1	372 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096		Q8N9G6	341 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SIMC1	Q8NDZ2	872 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	CEP76	Q8TAP6	659 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SAP25	Q8TEE9	199 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	HOXB13	Q92826	284 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	MVB12A	Q96EY5	273 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	MMAB	Q96EY8	250 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	ALPK1	Q96QP1	1244 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PITX2	Q99697	317 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	NMNAT1	Q9HAN9	279 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	ADAP2	Q9NPF8	381 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PRTFDC1	Q9NRG1	225 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	IFT52	Q9Y366	437 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PCDHGA5	Q9Y5G8	931 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PROB1	E7EW31	1015 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	OR10H2	O60403	315 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	COQ9	O75208	318 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	OXSR1	O95747	527 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	AK1	P00568	194 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	ELK4	P28324	431 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PRKAR1B	P31321	381 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	CSF2RB	P32927	897 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	ALDH3B2	P48448	385 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	HLCS	P50747	726 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PDX1	P52945	283 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	HSD17B7	P56937	341 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC13A2	Q13183	592 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	RAPSN	Q13702	412 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	COL9A2	Q14055	689 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	AP1AR	Q63HQ0	302 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	FRRS1	Q6ZNA5	592 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	WDR53	Q7Z5U6	358 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SATL1	Q86VE3	508 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	COMTD1	Q86VU5	262 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	TSPYL5	Q86VY4	417 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	GATAD2A	Q86YP4	633 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	RBM45	Q8IUH3	476 aa	Known RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	LACC1	Q8IV20	430 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	VWA5B2	Q8N398	1253 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	OR4C6	Q8NH72	309 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	VANGL1	Q8TAA9	524 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	NR4A3	Q92570	626 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PMM1	Q92871	262 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SDF2	Q99470	211 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	APOL4	Q9BPW4	351 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	WFDC6	Q9BQY6	131 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	CXorf21	Q9HAI6	301 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	PAPOLB	Q9NRJ5	636 aa	Known RBP	13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	CUTC	Q9NTM9	273 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SEMA4G	Q9NTN9	838 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC6A14	Q9UN76	642 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	GMPPB	Q9Y5P6	360 aa		13.73	□□□□□ -0.21
VPS33B-205	ENST00000556096	OTOGL	Q3ZCN5	2332 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	ARID1B	Q8NFD5	2236 aa	Predicted RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	KHNYN	O15037	678 aa	Known RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	TOX3	O15405	576 aa	Predicted RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	FCMR	O60667	390 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	NME6	O75414	186 aa	Predicted RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	OR2B3	O76000	313 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	ZIC2	O95409	532 aa	Predicted RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	H1F0	P07305	194 aa	Known RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	S1PR1	P21453	382 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	CBL	P22681	906 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	GALNS	P34059	522 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	GCGR	P47871	477 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	SEPHS1	P49903	392 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	CDH15	P55291	814 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	MAT1A	Q00266	395 aa	Known RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	STX4	Q12846	297 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	KCNAB1	Q14722	419 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	NR0B2	Q15466	257 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	NADK2	Q4G0N4	442 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	MLIP	Q5VWP3	458 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	ZNF770	Q6IQ21	691 aa	Predicted RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	SLC23A3	Q6PIS1	610 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	DEF8	Q6ZN54	512 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	TAGAP	Q8N103	731 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	FAM181A	Q8N9Y4	354 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	OR51Q1	Q8NH59	317 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	CCDC74A	Q96AQ1	378 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	FKBP10	Q96AY3	582 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	RBM18	Q96H35	190 aa	Known RBP	13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	HRASLS5	Q96KN8	279 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	ARHGDIG	Q99819	225 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	ALOXE3	Q9BYJ1	711 aa		13.72	□□□□□ -0.21
VPS33B-205	ENST00000556096	SAP130	Q9H0E3	1048 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms