RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 TM9SF2Q99805 663 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 SH3GL2Q99962 352 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 OR2B2Q9GZK3 357 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 GALNT9Q9HCQ5 603 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 SERHLQ9NQF3 203 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 MIEF1Q9NQG6 463 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 SLC35C2Q9NQQ7 365 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 TAS2R9Q9NYW1 312 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 CRIM1Q9NZV1 1036 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 HEY2Q9UBP5 337 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 OR10H1Q9Y4A9 318 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 WIF1Q9Y5W5 379 aa11.96□□□□□ -0.49
RTN3-213ENST00000543552 SERTM1A2A2V5 107 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 PLOD3O60568 738 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 GLRA3O75311 464 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 CRCPO75575 148 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 GOSR1O95249 250 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 ANXA4P09525 319 aaPredicted RBP11.95□□□□□ -0.5
RTN3-213ENST00000543552 MYL2P10916 166 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 PYGBP11216 843 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 GCAP28676 217 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 SRD5A2P31213 254 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 ZNF136P52737 540 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 DGKQP52824 942 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 HMGCS1Q01581 520 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 DUSP2Q05923 314 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 FBXW10Q5XX13 1052 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 FAM180BQ6P0A1 224 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 LARP4Q71RC2 724 aaKnown RBP eCLIP11.95□□□□□ -0.5
RTN3-213ENST00000543552 CCNYL1Q8N7R7 359 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 OR9A2Q8NGT5 310 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 C16orf78Q8WTQ4 265 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 VSTM2LQ96N03 204 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 ADOQ96SZ5 270 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 SFXN3Q9BWM7 321 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 MID1IP1Q9NPA3 183 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 RASSF1Q9NS23 344 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 SIRT5Q9NXA8 310 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 TAS2R10Q9NYW0 307 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 DKKL1Q9UK85 242 aa11.95□□□□□ -0.5
RTN3-213ENST00000543552 WBP11Q9Y2W2 641 aaKnown RBP11.95□□□□□ -0.5
RTN3-213ENST00000543552 ZFHX3Q15911 3703 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 MTORP42345 2549 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 A0A087WV62 115 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 TUBAL3A6NHL2 446 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 A6NNC1 897 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 GOLGA8RI6L899 631 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 FREM3P0C091 2139 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 TMIGD3P0DMS9 266 aaPredicted RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 CT45A8P0DMV1 189 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 CT45A9P0DMV2 189 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 CHN1P15882 459 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 DDCP20711 480 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 CHMP24386 653 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 DNASE1P24855 282 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 NTSP30990 170 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 PTGDSP41222 190 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 PNLIPRP2P54317 469 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 WNT3P56703 355 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 RAE1P78406 368 aaKnown RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 ZNF155Q12901 538 aaPredicted RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 SLC29A2Q14542 456 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 ZNHIT3Q15649 155 aaPredicted RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 CEBPEQ15744 281 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 CT45A2Q5DJT8 189 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 CFAP157Q5JU67 520 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 DCST1Q5T197 706 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 SIMC1Q8NDZ2 872 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 CDC26Q8NHZ8 85 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 FAM76AQ8TAV0 307 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 KAT2AQ92830 837 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 APIPQ96GX9 242 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 FOXC2Q99958 501 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 GPATCH1Q9BRR8 931 aaKnown RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 EBPLQ9BY08 206 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 PPCSQ9HAB8 311 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 FOLH1BQ9HBA9 442 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 MRTO4Q9UKD2 239 aaKnown RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 GRID1Q9ULK0 1009 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 MRPS18CQ9Y3D5 142 aaKnown RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 SETD2Q9BYW2 2564 aaPredicted RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 MAP1AP78559 2803 aaPredicted RBP11.94□□□□□ -0.5
RTN3-213ENST00000543552 ITPR3Q14573 2671 aa11.94□□□□□ -0.5
RTN3-213ENST00000543552 TSPAN2O60636 221 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 TACR1P25103 407 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 SOX18P35713 384 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 CPA2P48052 419 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 CCT5P48643 541 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 HTR6P50406 440 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 NCBP2P52298 156 aaKnown RBP eCLIP11.93□□□□□ -0.5
RTN3-213ENST00000543552 CORO7P57737 925 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 BTKQ06187 659 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 C2orf80Q0P641 193 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 GAB1Q13480 694 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 CCDC153Q494R4 210 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 ZYG11AQ6WRX3 759 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 IKBIPQ70UQ0 350 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 SLC44A2Q8IWA5 706 aaPredicted RBP11.93□□□□□ -0.5
RTN3-213ENST00000543552 TRIM42Q8IWZ5 723 aa11.93□□□□□ -0.5
RTN3-213ENST00000543552 HOMEZQ8IX15 550 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms