RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 C3P1Q6ZMU1 363 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 AGR3Q8TD06 166 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 GFM2Q969S9 779 aaKnown RBP12.99□□□□□ -0.33
USP28-209ENST00000540925 TMBIM1Q969X1 311 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 CIDECQ96AQ7 238 aaPredicted RBP12.99□□□□□ -0.33
USP28-209ENST00000540925 MTERF3Q96E29 417 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 ZNF597Q96LX8 424 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 PPP3R2Q96LZ3 170 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 TAS2R9Q9NYW1 312 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 SPRR3Q9UBC9 169 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 ATP6V1HQ9UI12 483 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 C15orf41Q9Y2V0 281 aa12.99□□□□□ -0.33
USP28-209ENST00000540925 BCKDKO14874 412 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 ABCB7O75027 752 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 COQ9O75208 318 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 HPNP05981 417 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 ASMTP46597 345 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 WDR4P57081 412 aaKnown RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 ABCE1P61221 599 aaKnown RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 RPP38P78345 283 aaKnown RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 GXYLT1Q4G148 440 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 EXOSC6Q5RKV6 272 aaKnown RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 TIGD3Q6B0B8 471 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 ZNF551Q7Z340 670 aaPredicted RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 RIMKLAQ8IXN7 391 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 RPRMLQ8N4K4 120 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 OR4N2Q8NGD1 307 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 CLHC1Q8NHS4 586 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 NEIL3Q8TAT5 605 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 COL21A1Q96P44 957 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 TP63Q9H3D4 680 aaPredicted RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 PNPLA3Q9NST1 481 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 ACSS1Q9NUB1 689 aaPredicted RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 ASIC5Q9NY37 505 aa12.98□□□□□ -0.33
USP28-209ENST00000540925 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.98□□□□□ -0.33
USP28-209ENST00000540925 LRBAP50851 2863 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 TRGV5A0A0B4J1U4 118 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 WDR91A4D1P6 747 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 B4DXG7 233 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 NPIPA2E9PIF3 369 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 NPIPA3F8WFD2 350 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 SNPHO15079 494 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 SCAMP2O15127 329 aaKnown RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 PDPK1O15530 556 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 AKAP10O43572 662 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 ICOSLGO75144 302 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 PEX11AO75192 247 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 SKAP2O75563 359 aaPredicted RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 SNUPNO95149 360 aaKnown RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 ESRRAP11474 423 aaPredicted RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 GRK2P25098 689 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 GRNP28799 593 aaKnown RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 PTPN6P29350 595 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 CDK9P50750 372 aaKnown RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 SLC18A1P54219 525 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 PNLIPRP2P54317 469 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 GAS1P54826 345 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 C21orf58P58505 322 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 MLC1Q15049 377 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 SMU1Q2TAY7 513 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 ATP6AP1LQ52LC2 224 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 TMEM198Q66K66 360 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 ZNF787Q6DD87 383 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 RTL6Q6ICC9 239 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 SLC30A6Q6NXT4 461 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 PACS2Q86VP3 889 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 EID3Q8N140 333 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 ZNF781Q8N8C0 355 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 ZBTB9Q96C00 473 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 PPCDCQ96CD2 204 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 TLCD1Q96CP7 247 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 GIMAP5Q96F15 307 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 GNRHR2Q96P88 292 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 LMF2Q9BU23 707 aaKnown RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 SLC6A15Q9H2J7 730 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 CENPHQ9H3R5 247 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 GALNT9Q9HCQ5 603 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 DDX18Q9NVP1 670 aaKnown RBP12.97□□□□□ -0.33
USP28-209ENST00000540925 TNFRSF10DQ9UBN6 386 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 B4GALT7Q9UBV7 327 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 RAP2CQ9Y3L5 183 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 PCDHGB3Q9Y5G1 929 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 FAM215AQ9Y5M1 114 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 ABCA12Q86UK0 2595 aa12.97□□□□□ -0.33
USP28-209ENST00000540925 PHF3Q92576 2039 aaKnown RBP12.96□□□□□ -0.33
USP28-209ENST00000540925 APCP25054 2843 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 PRAMEF25A6NGN4 478 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 ERLIN1O75477 346 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 HSPA4LO95757 839 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 BGNP21810 368 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 ELAVL4P26378 380 aaKnown RBP12.96□□□□□ -0.33
USP28-209ENST00000540925 MAPK1P28482 360 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 MAN2A2P49641 1150 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 SMSP52788 366 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 PTGR1Q14914 329 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 ZNF630Q2M218 657 aaPredicted RBP12.96□□□□□ -0.33
USP28-209ENST00000540925 CYP27C1Q4G0S4 372 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 NHSL2Q5HYW2 709 aa12.96□□□□□ -0.33
USP28-209ENST00000540925 LARP4Q71RC2 724 aaKnown RBP eCLIP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms