RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TUBD1Q9UJT1 453 aa12□□□□□ -0.49
CCDC42-202ENST00000539522 KCNE3Q9Y6H6 103 aa12□□□□□ -0.49
CCDC42-202ENST00000539522 C2orf92A0A1B0GVN3 265 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 PRAMEF27A3QJZ7 478 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 H0YHG0 523 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 MKRN2OSH3BPM6 223 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 EMC8O43402 210 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 PRAMEF2O60811 474 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 SLITRK5O94991 958 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 KCNH1O95259 989 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 CPSF4O95639 269 aaKnown RBP11.99□□□□□ -0.49
CCDC42-202ENST00000539522 IGKV1D-16P01601 117 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 ALPPP05187 535 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 GPC1P35052 558 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 SOX3P41225 446 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 TRPC1P48995 793 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 CCT3P49368 545 aaKnown RBP11.99□□□□□ -0.49
CCDC42-202ENST00000539522 RPS26P62854 115 aaKnown RBP11.99□□□□□ -0.49
CCDC42-202ENST00000539522 NFYCQ13952 458 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 MEP1AQ16819 746 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 ZNF791Q3KP31 576 aaPredicted RBP11.99□□□□□ -0.49
CCDC42-202ENST00000539522 SPATS1Q496A3 300 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 MFSD12Q6NUT3 480 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 C8orf82Q6P1X6 216 aaPredicted RBP11.99□□□□□ -0.49
CCDC42-202ENST00000539522 DLEU7Q6UYE1 221 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 Q8NA96 180 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 SLC16A11Q8NCK7 471 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 NUP43Q8NFH3 380 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 OR4A15Q8NGL6 344 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 ZFP28Q8NHY6 868 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 PHF12Q96QT6 1004 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 GAL3ST4Q96RP7 486 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 GPATCH1Q9BRR8 931 aaKnown RBP11.99□□□□□ -0.49
CCDC42-202ENST00000539522 LMF2Q9BU23 707 aaKnown RBP11.99□□□□□ -0.49
CCDC42-202ENST00000539522 HES7Q9BYE0 225 aa11.99□□□□□ -0.49
CCDC42-202ENST00000539522 NCKAP5O14513 1909 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 GXYLT2A0PJZ3 443 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 TO15178 435 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 ATXN7O15265 892 aaPredicted RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 ERN1O75460 977 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 HMGN2P05204 90 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 DRD5P21918 477 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 PPICP45877 212 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 NR0B1P51843 470 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 PRKAG1P54619 331 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 CASP9P55211 416 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 DUSP5Q16690 384 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 TRMT5Q32P41 509 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 NADK2Q4G0N4 442 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 LRIF1Q5T3J3 769 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 SAXO2Q658L1 398 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 SPINK14Q6IE38 97 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 PGM2L1Q6PCE3 622 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 DNAJC14Q6Y2X3 702 aaPredicted RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 BNC2Q6ZN30 1099 aaPredicted RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 MDGA2Q7Z553 956 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 ZAR1Q86SH2 424 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 PRR22Q8IZ63 422 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 FBXW8Q8N3Y1 598 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 SLC5A8Q8N695 610 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 C17orf47Q8NEP4 570 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 C9orf43Q8TAL5 461 aaPredicted RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 FBXO30Q8TB52 745 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 SFXN5Q8TD22 340 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 ZFP90Q8TF47 636 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 HAS2Q92819 552 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 UTP4Q969X6 686 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 TP53INP1Q96A56 240 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 WBP1Q96G27 269 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 AURKBQ96GD4 344 aaPredicted RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 ZNF354BQ96LW1 612 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 SH3GL1Q99961 368 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 YIPF4Q9BSR8 244 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 RNF32Q9H0A6 362 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 IKZF5Q9H5V7 419 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 PROK2Q9HC23 129 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 EQTNQ9NQ60 294 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 ZCCHC3Q9NUD5 404 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 DDX18Q9NVP1 670 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 FBXO34Q9NWN3 711 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 AP3M1Q9Y2T2 418 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 HRH3Q9Y5N1 445 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 SNX8Q9Y5X2 465 aa11.98□□□□□ -0.49
CCDC42-202ENST00000539522 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.98□□□□□ -0.49
CCDC42-202ENST00000539522 A0A096LPI6 279 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 C15orf38-AP3S2A0A0A6YYH1 394 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 A0A0G2JMM0 328 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 RNF103-CHMP3A0A140T963 221 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 A0A1W2PPB8 328 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 A0A1W2PRS3 328 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 FRG2CA6NGY1 282 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 KIR3DP1A8MWS1 328 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 B4DXG7 233 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 FXYD1O00168 92 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 DYRK3O43781 588 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 TSPAN2O60636 221 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 CIB2O75838 187 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 BCAS2O75934 225 aaPredicted RBP11.97□□□□□ -0.49
CCDC42-202ENST00000539522 C1QL1O75973 258 aa11.97□□□□□ -0.49
CCDC42-202ENST00000539522 NKX2-2O95096 273 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms