RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	FAM43B	Q6ZT52	329 aa	Predicted RBP	4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	STOX1	Q6ZVD7	989 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	GPRIN3	Q6ZVF9	776 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	TMUB2	Q71RG4	321 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	PRSS48	Q7RTY5	328 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	TIPARP	Q7Z3E1	657 aa	Known RBP	4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	LRRC49	Q8IUZ0	686 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	ZNF440	Q8IYI8	595 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	ARL14	Q8N4G2	192 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	SUMF1	Q8NBK3	374 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	RIBC2	Q9H4K1	309 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	WDR76	Q9H967	626 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	CENPM	Q9NSP4	180 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	AATF	Q9NY61	560 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	RCOR3	Q9P2K3	495 aa	Predicted RBP	4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	TMCC3	Q9ULS5	477 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	DHRS7	Q9Y394	339 aa		4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	MRPL11	Q9Y3B7	192 aa	Known RBP	4.36	□□□□□ -1.71
PRKDC-208	ENST00000536710	IGHV3-16	A0A0C4DH30	117 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	FOXI3	A8MTJ6	420 aa	Predicted RBP	4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	SHISA9	B4DS77	424 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	CASK	O14936	926 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	IDH1	O75874	414 aa	Known RBP	4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ANP32D	O95626	131 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	SEMA4F	O95754	770 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	MBD3	O95983	291 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	UQCRB	P14927	111 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	CYLC1	P35663	651 aa	Predicted RBP	4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ARHGDIA	P52565	204 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ELP6	Q0PNE2	266 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ABRAXAS2	Q15018	415 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	TAF7	Q15545	349 aa	Predicted RBP	4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	CCL14	Q16627	93 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	PCK2	Q16822	640 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ZNF311	Q5JNZ3	666 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	SLX4IP	Q5VYV7	408 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	LEMD1	Q68G75	181 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ZNF343	Q6P1L6	599 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	SLC39A4	Q6P5W5	647 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	RFWD3	Q6PCD5	774 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	METTL7B	Q6UX53	244 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ARMCX2	Q7L311	632 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	CBWD2	Q8IUF1	395 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710		Q8N377	158 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	NFAM1	Q8NET5	270 aa	Predicted RBP	4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	ART4	Q93070	314 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	LPAR2	Q9HBW0	351 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	FARSB	Q9NSD9	589 aa	Known RBP	4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	RDH8	Q9NYR8	311 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	MBD2	Q9UBB5	411 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	STYXL1	Q9Y6J8	313 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	PRSS21	Q9Y6M0	314 aa		4.35	□□□□□ -1.71
PRKDC-208	ENST00000536710	FBLL1	A6NHQ2	334 aa	Known RBP	4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	WASHC1	A8K0Z3	465 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	PDLIM1	O00151	329 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	BRCC3	P46736	316 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	PGF	P49763	221 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	ZNF85	Q03923	595 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	CYLC2	Q14093	348 aa	Predicted RBP	4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	TFDP1	Q14186	410 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	RAB35	Q15286	201 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	TPD52L1	Q16890	204 aa	Predicted RBP	4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	CCDC57	Q2TAC2	916 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	GLIPR1L2	Q4G1C9	344 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	VWA2	Q5GFL6	755 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	ZNF506	Q5JVG8	444 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	FAM182A	Q5T1J6	154 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	NIPAL3	Q6P499	406 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	LEG1	Q6P5S2	330 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	CENPU	Q71F23	418 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	LHFPL4	Q7Z7J7	247 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	SLC25A42	Q86VD7	318 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	PHC2	Q8IXK0	858 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	ARL6IP6	Q8N6S5	226 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	STKLD1	Q8NE28	680 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	OR10T2	Q8NGX3	314 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	RFESD	Q8TAC1	157 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	ZNF671	Q8TAW3	534 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	DTNBP1	Q96EV8	351 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	VPS39	Q96JC1	886 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	RBM4B	Q9BQ04	359 aa	Known RBP	4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	COG4	Q9H9E3	785 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	POLD4	Q9HCU8	107 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	ZNF446	Q9NWS9	450 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	RNF24	Q9Y225	148 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	PARD3	Q8TEW0	1356 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	CUX2	O14529	1486 aa		4.34	□□□□□ -1.71
PRKDC-208	ENST00000536710	LRRC30	A6NM36	301 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	SDHD	O14521	159 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	TOX	O94900	526 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	CSF2	P04141	144 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	HOXB7	P09629	217 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	HMGCL	P35914	325 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	STK19	P49842	368 aa	Predicted RBP	4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	UBE2V2	Q15819	145 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	ASPHD2	Q6ICH7	369 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	SLC25A24	Q6NUK1	477 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	HACD2	Q6Y1H2	254 aa		4.33	□□□□□ -1.72
PRKDC-208	ENST00000536710	FADS6	Q8N9I5	356 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms