RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 DNAJC27Q9NZQ0 273 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 PFDN2Q9UHV9 154 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 PCDHGB7Q9Y5F8 929 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 PCDHGB3Q9Y5G1 929 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 RAB19A4D1S5 217 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 H7C2Y5 167 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 SSNA1O43805 119 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 RNGTTO60942 597 aaKnown RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 SLC16A8O95907 504 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 JUPP14923 745 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 IL1RNP18510 177 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 PTX3P26022 381 aaPredicted RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 COX10Q12887 443 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 MAD2L1Q13257 205 aaPredicted RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 GPR176Q14439 515 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 LRRC70Q7Z2Q7 622 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 C2orf73Q8N5S3 287 aaPredicted RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 CHIAQ9BZP6 476 aa13.19□□□□□ -0.3
LIG1-203ENST00000536218 TINAGL1Q9GZM7 467 aaPredicted RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 ZNF624Q9P2J8 865 aaPredicted RBP13.19□□□□□ -0.3
LIG1-203ENST00000536218 E7EQ34 232 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 QSOX1O00391 747 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 RFXANKO14593 260 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 CASKO14936 926 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 NCR1O76036 304 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 MPC1LP0DKB6 136 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 RHCEP18577 417 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 PBX2P40425 430 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 GPR1P46091 355 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 SLC6A12P48065 614 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 MEOX2P50222 304 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 GZMMP51124 257 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 AGTRAPQ6RW13 159 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 THOC6Q86W42 341 aaKnown RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 AP3S1Q92572 193 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 OR51J1Q9H342 316 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 C11orf16Q9NQ32 467 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 SLCO1C1Q9NYB5 712 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 EMC3Q9P0I2 261 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 KLHL42Q9P2K6 505 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 HCN2Q9UL51 889 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 PCDHGA2Q9Y5H1 932 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 CXorf51AA0A1B0GTR3 108 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 A0A1B0GVC2 190 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 A6NIN4 97 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 IL1AP01583 271 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 SRPRAP08240 638 aaKnown RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 SPIBQ01892 262 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 ZNF234Q14588 700 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 CRTC2Q53ET0 693 aaPredicted RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 FRG2Q64ET8 278 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 GDPGP1Q6ZNW5 385 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 USP30Q70CQ3 517 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 LGI4Q8N135 537 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 PGBD3Q8N328 593 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 KIAA1143Q96AT1 154 aaPredicted RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 TBC1D20Q96BZ9 403 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 KCTD7Q96MP8 289 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 FRG2BQ96QU4 278 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 NELL2Q99435 816 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 ABCG5Q9H222 651 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 MTIF3Q9H2K0 278 aaKnown RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 PPP1R3EQ9H7J1 279 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 PLXNB3Q9ULL4 1909 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 ENTPD6O75354 484 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 PRNPP04156 253 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 HOXB6P17509 224 aaKnown RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 TRIM23P36406 574 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 FEN1P39748 380 aaKnown RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 RAB8AP61006 207 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 ZNF91Q05481 1191 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 ZNF628Q5EBL2 1059 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 C9orf64Q5T6V5 341 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 TRMT11Q7Z4G4 463 aaKnown RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 ADGRF3Q8IZF5 1079 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 NANPQ8TBE9 248 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 OR8D1Q8WZ84 308 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 TIFAQ96CG3 184 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 ERMAPQ96PL5 475 aaPredicted RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 KATNB1Q9BVA0 655 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 GPRC5BQ9NZH0 403 aa13.18□□□□□ -0.3
LIG1-203ENST00000536218 KLF2Q9Y5W3 355 aaPredicted RBP13.18□□□□□ -0.3
LIG1-203ENST00000536218 F5P12259 2224 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 CHURC1-FNTBB4DL54 471 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 ADAMDEC1O15204 470 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 HRO43593 1189 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 SLCO2B1O94956 709 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 APOL3O95236 402 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 OPN1SWP03999 348 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 CATP04040 527 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 LPLP06858 475 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 EPHX1P07099 455 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 HBQ1P09105 142 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 GABRB1P18505 474 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 POU3F2P20265 443 aaPredicted RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 CD22P20273 847 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 OR1E2P47887 323 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 MAZP56270 477 aaKnown RBP13.17□□□□□ -0.3
LIG1-203ENST00000536218 AP1S2P56377 157 aa13.17□□□□□ -0.3
LIG1-203ENST00000536218 TSPAN5P62079 268 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms