RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TJAP1Q5JTD0 557 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ATAT1Q5SQI0 421 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 SLC25A30Q5SVS4 291 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 FAM109BQ6ICB4 259 aaPredicted RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 CCBE1Q6UXH8 406 aaPredicted RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 RRM2BQ7LG56 351 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 C16orf62Q7Z3J2 963 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 OR8H2Q8N162 312 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 MFSD9Q8NBP5 474 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 FLCNQ8NFG4 579 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 SLC9A6Q92581 669 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 CLIP3Q96DZ5 547 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ELP4Q96EB1 424 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 TMEM106CQ9BVX2 250 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 MKRN2Q9H000 416 aaKnown RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 SLC6A17Q9H1V8 727 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 SLC38A1Q9H2H9 487 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 MTIF3Q9H2K0 278 aaKnown RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 RERGLQ9H628 205 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 IGFLR1Q9H665 355 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 TESQ9UGI8 421 aaKnown RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 GPR52Q9Y2T5 361 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 GPR55Q9Y2T6 319 aaPredicted RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 SLC31A1O15431 190 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 KCNJ13O60928 360 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 APOA1P02647 267 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 CHRM5P08912 532 aaPredicted RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 IFNGR2P38484 337 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 AVPR1BP47901 424 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 MLLT1Q03111 559 aaPredicted RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 RUNX1T1Q06455 604 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 LTB4RQ15722 352 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 PRAMEF8Q5VWM4 474 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 PRAMEF7Q5VXH5 474 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 SLC27A4Q6P1M0 643 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 ZNF730Q6ZMV8 503 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 GDPD3Q7L5L3 318 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 VASH1Q7L8A9 365 aaPredicted RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 PRICKLE2Q7Z3G6 844 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 OR4E2Q8NGC2 313 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 SDHCQ99643 169 aaPredicted RBP12.35□□□□□ -0.43
LDLR-203ENST00000535915 CCDC32Q9BV29 185 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 SAP130Q9H0E3 1048 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 CNIH4Q9P003 139 aa12.35□□□□□ -0.43
LDLR-203ENST00000535915 MN1Q10571 1320 aaPredicted RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 SZT2Q5T011 3432 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3DA0A087WVF3 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3IA0A087WXS9 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3EA0A087X179 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3KA0A087X1G2 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3FA6NER0 549 aaPredicted RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 PRR19A6NJB7 356 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3LB9A6J9 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3HP0C7X1 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TSFMP43897 325 aaKnown RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 ARFIP1P53367 373 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 EFNB1P98172 346 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 MAP4K2Q12851 820 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SELENBP1Q13228 472 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 COL9A2Q14055 689 aaPredicted RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 ATAD3BQ5T9A4 648 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3GQ6DHY5 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3CQ6IPX1 549 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 MTSS1LQ765P7 747 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 AKAP14Q86UN6 197 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TBC1D3Q8IZP1 549 aaPredicted RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 KCT2Q8NC54 265 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 ZNF784Q8NCA9 323 aaPredicted RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 TMEM163Q8TC26 289 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 GNPDA2Q8TDQ7 276 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 GPR151Q8TDV0 419 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TMEM203Q969S6 136 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 FAM46AQ96IP4 442 aaKnown RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 TXNDC15Q96J42 360 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 FCRL4Q96PJ5 515 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SARGQ9BW04 601 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 C1QTNF7Q9BXJ2 289 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 FGF22Q9HCT0 170 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SEMA4GQ9NTN9 838 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SNX7Q9UNH6 387 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SPIN1Q9Y657 262 aaPredicted RBP12.34□□□□□ -0.43
LDLR-203ENST00000535915 COLEC10Q9Y6Z7 277 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SYT5O00445 386 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 CDRT1O95170 752 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 NTN1O95631 604 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TSPAN19P0C672 248 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 CCNYL3P0C7X3 344 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TGM4P49221 684 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 TRAM2Q15035 370 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 CLEC12AQ5QGZ9 265 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SLC36A4Q6YBV0 504 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 AMIGO1Q86WK6 493 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 C7orf61Q8IZ16 206 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 LCN9Q8WX39 176 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 RNFT2Q96EX2 444 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 NELL2Q99435 816 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 LIPT1Q9Y234 373 aa12.34□□□□□ -0.43
LDLR-203ENST00000535915 SNTNA6NMZ2 147 aa12.33□□□□□ -0.44
LDLR-203ENST00000535915 PRODHO43272 600 aa12.33□□□□□ -0.44
LDLR-203ENST00000535915 PLRG1O43660 514 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms