RNA–Protein interactions for RNA: ENST00000515753.1

HERC4-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 589 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-215ENST00000515753 SF3B1O75533 1304 aaKnown RBP eCLIP2.69□□□□□ -1.98
HERC4-215ENST00000515753 USP42Q9H9J4 1324 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 CLSPNQ9HAW4 1339 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 MEGF6O75095 1541 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 ARHGEF28Q8N1W1 1705 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 IGHV3OR16-10A0A075B7F0 116 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 TRBV5-5A0A0J9YX44 114 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 A0A0U1RQV5 110 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 ATP6AP2A0A1C7CYW4 349 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 A0A1W2PNU3 283 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 XKRY2A2RUG3 117 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CTAGE15A4D2H0 777 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 EPM2AB3EWF7 344 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 H0Y8G0 127 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 K7EQM0 130 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 XPO1O14980 1071 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 KLHL41O60662 606 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CEACAM4O75871 244 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 SORBS2O94875 1100 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 CLDN1O95832 211 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 HIST1H2AGP0C0S8 130 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 ZSCAN5DPP0CG00 497 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CLUP10909 449 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 TOP1P11387 765 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 ODC1P11926 461 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 B4GALT1P15291 398 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 RPA2P15927 270 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 DRD5P21918 477 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CALB2P22676 271 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 ALDH1B1P30837 517 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 GDI1P31150 447 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 DUTP33316 252 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 MMP12P39900 470 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 OPRL1P41146 370 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 DHPSP49366 369 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 CCR4P51679 360 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 NAPAP54920 295 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 KRTAP12-2P59991 146 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CSNK2BP67870 215 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CCNA1P78396 465 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 FUT7Q11130 342 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 GPR50Q13585 617 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 MEF2DQ14814 521 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 TMEM132DQ14C87 1099 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 HEPACAMQ14CZ8 416 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 PDK3Q15120 406 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 ZNF74Q16587 644 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 ZNF239Q16600 458 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 KRTAP13-3Q3SY46 172 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 GPAT3Q53EU6 434 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 MPPE1Q53F39 396 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 AGKQ53H12 422 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CMPK2Q5EBM0 449 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 NCR3LG1Q68D85 454 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 SNRNP48Q6IEG0 339 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 SLC27A4Q6P1M0 643 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 ZNF530Q6P9A1 599 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 PAQR9Q6ZVX9 377 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 TAS2R42Q7RTR8 314 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 BNIPLQ7Z465 357 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CTAGE6Q86UF2 777 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 FAM131BQ86XD5 332 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 TTC5Q8N0Z6 440 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 GPRC5AQ8NFJ5 357 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 BRSK1Q8TDC3 778 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 GIPC3Q8TF64 312 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 METTL21AQ8WXB1 218 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 PHYHIPQ92561 330 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 PIK3R3Q92569 461 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 GTF3AQ92664 365 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 HIST1H2ACQ93077 130 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 C18orf12Q96KH6 178 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 SENP8Q96LD8 212 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 ZNF607Q96SK3 696 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 PLIN2Q99541 437 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 LPAR4Q99677 370 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 NKX3-1Q99801 234 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 CCM2Q9BSQ5 444 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 FAM49AQ9H0Q0 323 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 DPEP2Q9H4A9 486 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 MED20Q9H944 212 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 YAE1D1Q9NRH1 226 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 DDX28Q9NUL7 540 aaKnown RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 FBXL4Q9UKA2 621 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 FOXJ3Q9UPW0 622 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 NCKAP1Q9Y2A7 1128 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CAB39Q9Y376 341 aaPredicted RBP2.69□□□□□ -1.98
HERC4-215ENST00000515753 SPACA6W5XKT8 324 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 NPC1L1Q9UHC9 1359 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 CASZ1Q86V15 1759 aa2.69□□□□□ -1.98
HERC4-215ENST00000515753 KIF16BQ96L93 1317 aa2.68□□□□□ -1.98
HERC4-215ENST00000515753 A0A087WUV0 522 aaPredicted RBP2.68□□□□□ -1.98
HERC4-215ENST00000515753 A0A1W2PR80 420 aa2.68□□□□□ -1.98
HERC4-215ENST00000515753 MBLAC1A4D2B0 266 aaPredicted RBP2.68□□□□□ -1.98
HERC4-215ENST00000515753 TMEM110-MUSTN1A8MSY1 372 aa2.68□□□□□ -1.98
HERC4-215ENST00000515753 A8MUI8 341 aa2.68□□□□□ -1.98
HERC4-215ENST00000515753 CCL24O00175 119 aa2.68□□□□□ -1.98
HERC4-215ENST00000515753 SOCS3O14543 225 aa2.68□□□□□ -1.98
HERC4-215ENST00000515753 CCSO14618 274 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms