RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PSMD4P55036 377 aaKnown RBP13.13□□□□□ -0.31
NUP54-216ENST00000514901 CORO7P57737 925 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 PHC1P78364 1004 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 PSG6Q00889 435 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 EFR3AQ14156 821 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 NNATQ16517 81 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 DECR1Q16698 335 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 NPSR1Q6W5P4 371 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 GK5Q6ZS86 529 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 SZRD1Q7Z422 152 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 FBXW8Q8N3Y1 598 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 OR10G3Q8NGC4 313 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 OR4A15Q8NGL6 344 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 GOT1L1Q8NHS2 421 aaPredicted RBP13.13□□□□□ -0.31
NUP54-216ENST00000514901 RFWD2Q8NHY2 731 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 SPPL2AQ8TCT8 520 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 TMCO6Q96DC7 493 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 GIMAP5Q96F15 307 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 THOC1Q96FV9 657 aaKnown RBP13.13□□□□□ -0.31
NUP54-216ENST00000514901 SLC35A4Q96G79 324 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 MARK4Q96L34 752 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 CCDC115Q96NT0 180 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 COL21A1Q96P44 957 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 TAAR6Q96RI8 345 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 FAM173AQ9BQD7 235 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 CXorf36Q9H7Y0 433 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 OLAHQ9NV23 265 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 ASF1BQ9NVP2 202 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 GIN1Q9NXP7 522 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 CBLCQ9ULV8 474 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 FAF1Q9UNN5 650 aaPredicted RBP13.13□□□□□ -0.31
NUP54-216ENST00000514901 PCDHGB3Q9Y5G1 929 aa13.13□□□□□ -0.31
NUP54-216ENST00000514901 CHCHD2Q9Y6H1 151 aaPredicted RBP13.13□□□□□ -0.31
NUP54-216ENST00000514901 FASNP49327 2511 aaKnown RBP13.13□□□□□ -0.31
NUP54-216ENST00000514901 NKX2-2O95096 273 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 SNX4O95219 450 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 CPSF4O95639 269 aaKnown RBP13.12□□□□□ -0.31
NUP54-216ENST00000514901 ALOX5P09917 674 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 CCL3P10147 92 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 UQCRC2P22695 453 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 IL12BP29460 328 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 GABRA3P34903 492 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 DGKQP52824 942 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 ARFIP2P53365 341 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 PNLIPRP2P54317 469 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 FBXW4P57775 412 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 SNTA1Q13424 505 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 GAB1Q13480 694 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 TP53BP2Q13625 1128 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 SQLEQ14534 574 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 ZNF324BQ6AW86 544 aaPredicted RBP13.12□□□□□ -0.31
NUP54-216ENST00000514901 MFSD12Q6NUT3 480 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 TMEM81Q6P7N7 255 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 PAOXQ6QHF9 649 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 ANKRD46Q86W74 232 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 ATCAYQ86WG3 371 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 PRR22Q8IZ63 422 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 CLECL1Q8IZS7 167 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 TRIML2Q8N7C3 387 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 ZFP62Q8NB50 900 aaPredicted RBP13.12□□□□□ -0.31
NUP54-216ENST00000514901 GALNT11Q8NCW6 608 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 OR5M3Q8NGP4 307 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 GPR151Q8TDV0 419 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 DIO2Q92813 273 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 TMBIM1Q969X1 311 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 MIB2Q96AX9 1013 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 ZNF317Q96PQ6 595 aaPredicted RBP13.12□□□□□ -0.31
NUP54-216ENST00000514901 STACQ99469 402 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 ACTRT3Q9BYD9 372 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 RMND5AQ9H871 391 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 EQTNQ9NQ60 294 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 DUSP22Q9NRW4 184 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 POLEQ07864 2286 aa13.12□□□□□ -0.31
NUP54-216ENST00000514901 SHANK1Q9Y566 2161 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 HS6ST1O60243 411 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 TSPAN2O60636 221 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 NME6O75414 186 aaPredicted RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 KCNH1O95259 989 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 HMGN2P05204 90 aaKnown RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 EDN3P14138 238 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 PLA2G2AP14555 144 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 NCF2P19878 526 aaPredicted RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 SOAT1P35610 550 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 PIGAP37287 484 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 MEOX1P50221 254 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 FOXK1P85037 733 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 ALDH6A1Q02252 535 aaKnown RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 ESPL1Q14674 2120 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 KRTCAP3Q53RY4 240 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 PRR30Q53SZ7 412 aaPredicted RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 EXOSC6Q5RKV6 272 aaKnown RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 CDC73Q6P1J9 531 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 BNC2Q6ZN30 1099 aaPredicted RBP13.11□□□□□ -0.31
NUP54-216ENST00000514901 OR2M7Q8NG81 312 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 NR4A3Q92570 626 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 SLC9A6Q92581 669 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 HGDQ93099 445 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 CHMP6Q96FZ7 201 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 ITCHQ96J02 903 aa13.11□□□□□ -0.31
NUP54-216ENST00000514901 FRMD6Q96NE9 622 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms