RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 DTD2Q96FN9 168 aa12□□□□□ -0.49
USP53-209ENST00000514665 SLC41A3Q96GZ6 507 aa12□□□□□ -0.49
USP53-209ENST00000514665 PEX11GQ96HA9 241 aa12□□□□□ -0.49
USP53-209ENST00000514665 CUEDC1Q9NWM3 386 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 SH2B3Q9UQQ2 575 aa12□□□□□ -0.49
USP53-209ENST00000514665 ZNF878C9JN71 531 aa12□□□□□ -0.49
USP53-209ENST00000514665 ZNF195O14628 629 aa12□□□□□ -0.49
USP53-209ENST00000514665 CDK1P06493 297 aa12□□□□□ -0.49
USP53-209ENST00000514665 ITGA5P08648 1049 aa12□□□□□ -0.49
USP53-209ENST00000514665 C1SP09871 688 aa12□□□□□ -0.49
USP53-209ENST00000514665 MAPK3P27361 379 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 GPAT4Q86UL3 456 aa12□□□□□ -0.49
USP53-209ENST00000514665 UBE2FQ969M7 185 aa12□□□□□ -0.49
USP53-209ENST00000514665 GAS2L1Q99501 681 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 MTHFD2LQ9H903 347 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 TMEM184CQ9NVA4 438 aa12□□□□□ -0.49
USP53-209ENST00000514665 USP36Q9P275 1121 aaKnown RBP12□□□□□ -0.49
USP53-209ENST00000514665 PLEKHA6Q9Y2H5 1048 aa12□□□□□ -0.49
USP53-209ENST00000514665 UPK1BO75841 260 aa12□□□□□ -0.49
USP53-209ENST00000514665 PRLP01236 227 aa12□□□□□ -0.49
USP53-209ENST00000514665 IL7P13232 177 aa12□□□□□ -0.49
USP53-209ENST00000514665 LRFN4Q6PJG9 635 aa12□□□□□ -0.49
USP53-209ENST00000514665 TBPL2Q6SJ96 375 aa12□□□□□ -0.49
USP53-209ENST00000514665 KCTD9Q7L273 389 aa12□□□□□ -0.49
USP53-209ENST00000514665 OR4K17Q8NGC6 315 aa12□□□□□ -0.49
USP53-209ENST00000514665 WFDC5Q8TCV5 224 aa12□□□□□ -0.49
USP53-209ENST00000514665 C15orf40Q8WUR7 153 aa12□□□□□ -0.49
USP53-209ENST00000514665 ISG20Q96AZ6 181 aaKnown RBP12□□□□□ -0.49
USP53-209ENST00000514665 TRIM43Q96BQ3 446 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 RBP7Q96R05 134 aa12□□□□□ -0.49
USP53-209ENST00000514665 GPR174Q9BXC1 333 aa12□□□□□ -0.49
USP53-209ENST00000514665 CPEB1Q9BZB8 566 aaKnown RBP12□□□□□ -0.49
USP53-209ENST00000514665 SMCHD1A6NHR9 2005 aa12□□□□□ -0.49
USP53-209ENST00000514665 KANTRA0A1W2PQU2 76 aa12□□□□□ -0.49
USP53-209ENST00000514665 AGAP5A6NIR3 686 aa12□□□□□ -0.49
USP53-209ENST00000514665 M0R233 179 aa12□□□□□ -0.49
USP53-209ENST00000514665 MEN1O00255 615 aa12□□□□□ -0.49
USP53-209ENST00000514665 RBBP9O75884 186 aa12□□□□□ -0.49
USP53-209ENST00000514665 C1orf105O95561 183 aa12□□□□□ -0.49
USP53-209ENST00000514665 GKN3PP0CG01 181 aa12□□□□□ -0.49
USP53-209ENST00000514665 ANXA3P12429 323 aa12□□□□□ -0.49
USP53-209ENST00000514665 MAGEA8P43361 318 aa12□□□□□ -0.49
USP53-209ENST00000514665 DHPSP49366 369 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 RPS15AP62244 130 aaKnown RBP12□□□□□ -0.49
USP53-209ENST00000514665 CPXM2Q8N436 756 aa12□□□□□ -0.49
USP53-209ENST00000514665 THAP4Q8WY91 577 aa12□□□□□ -0.49
USP53-209ENST00000514665 TGM7Q96PF1 710 aa12□□□□□ -0.49
USP53-209ENST00000514665 ZIC5Q96T25 663 aa12□□□□□ -0.49
USP53-209ENST00000514665 ACTRT3Q9BYD9 372 aa12□□□□□ -0.49
USP53-209ENST00000514665 METTL8Q9H825 291 aaKnown RBP12□□□□□ -0.49
USP53-209ENST00000514665 ATXN7L1Q9ULK2 861 aaPredicted RBP12□□□□□ -0.49
USP53-209ENST00000514665 BTAF1O14981 1849 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 TRAPPC13A5PLN9 417 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 NTSR1P30989 418 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 PIGAP37287 484 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 DAPP51397 102 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 ACTC1P68032 377 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 ACTA1P68133 377 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 MAPK14Q16539 360 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 TMEM156Q8N614 296 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 OR2A12Q8NGT7 310 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CREB3L4Q8TEY5 395 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 FCAMRQ8WWV6 532 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 GGHQ92820 318 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 OR4K3Q96R72 315 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 NUMBLQ9Y6R0 609 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 NINQ8N4C6 2090 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 HCKP08631 526 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 IMPA1P29218 277 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CLDN2P57739 230 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CXCR4P61073 352 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 PRKCDQ05655 676 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CCNJQ5T5M9 372 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 PHF19Q5T6S3 580 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 C1orf94Q6P1W5 598 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 RTN4RL1Q86UN2 441 aaPredicted RBP11.99□□□□□ -0.49
USP53-209ENST00000514665 POGLUT1Q8NBL1 392 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 ZMYND19Q96E35 227 aaPredicted RBP11.99□□□□□ -0.49
USP53-209ENST00000514665 IL23AQ9NPF7 189 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 MARCH5Q9NX47 278 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 KLHL42Q9P2K6 505 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 PRODH2Q9UF12 536 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 ASB1Q9Y576 335 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 COL18A1P39060 1754 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 LRP5O75197 1615 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 TTC3P53804 2025 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 TCRBV21S2A2A0A5A6 115 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 NARSO43776 548 aaKnown RBP11.99□□□□□ -0.49
USP53-209ENST00000514665 GTF2F2P13984 249 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 PRKCAP17252 672 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CEBPBP17676 345 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 C5AR1P21730 350 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CST9Q5W186 159 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CNIH2Q6PI25 160 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 GAREM2Q75VX8 874 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 DPPA4Q7L190 304 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 PNLDC1Q8NA58 520 aaKnown RBP11.99□□□□□ -0.49
USP53-209ENST00000514665 BCL7BQ9BQE9 202 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 CCDC32Q9BV29 185 aa11.99□□□□□ -0.49
USP53-209ENST00000514665 METTL7AQ9H8H3 244 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms