RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TPD52L1Q16890 204 aaPredicted RBP6.05□□□□□ -1.44
NUP54-215ENST00000514313 HACD2Q6Y1H2 254 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 ZNF491Q8N8L2 437 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 OR2T3Q8NH03 318 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 UPRTQ96BW1 309 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 DHTKD1Q96HY7 919 aaPredicted RBP6.05□□□□□ -1.44
NUP54-215ENST00000514313 ZNF607Q96SK3 696 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 ALG12Q9BV10 488 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 FGFBP2Q9BYJ0 223 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 GORASP2Q9H8Y8 452 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 SP140LQ9H930 580 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 ZNF446Q9NWS9 450 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 DUS2Q9NX74 493 aaKnown RBP6.05□□□□□ -1.44
NUP54-215ENST00000514313 SMPD3Q9NY59 655 aaPredicted RBP6.05□□□□□ -1.44
NUP54-215ENST00000514313 NUDT4Q9NZJ9 180 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 CCDC7Q96M83 1385 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 SYNJ2BP-COX16A0A087WUM0 186 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 BCLAF3A2AJT9 711 aaKnown RBP6.04□□□□□ -1.44
NUP54-215ENST00000514313 ASB14A6NK59 587 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 MAGEB3O15480 346 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 UGT1A4P22310 534 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 ATP4BP51164 291 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 CRIP2P52943 208 aaPredicted RBP6.04□□□□□ -1.44
NUP54-215ENST00000514313 IL24Q13007 206 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 CCDC152Q4G0S7 254 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 CFAP157Q5JU67 520 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 ACER2Q5QJU3 275 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 RABGAP1LQ5R372 815 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 SEL1L2Q5TEA6 688 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 TSEN54Q7Z6J9 526 aaKnown RBP6.04□□□□□ -1.44
NUP54-215ENST00000514313 RPAINQ86UA6 219 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 SPEM1Q8N4L4 309 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 CABLES2Q9BTV7 478 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 OCR1Q9BZK8 76 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 DHX33Q9H6R0 707 aaKnown RBP6.04□□□□□ -1.44
NUP54-215ENST00000514313 ESM1Q9NQ30 184 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 RBM28Q9NW13 759 aaKnown RBP6.04□□□□□ -1.44
NUP54-215ENST00000514313 RARRES3Q9UL19 164 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 MGAT4AQ9UM21 535 aa6.04□□□□□ -1.44
NUP54-215ENST00000514313 NOTCH4Q99466 2003 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 IGLV4-3A0A075B6K6 122 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 TEX48A0A1B0GUV7 120 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 TRIM64CA6NLI5 447 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 PDHXO00330 501 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 NTN3O00634 580 aaPredicted RBP6.03□□□□□ -1.44
NUP54-215ENST00000514313 CTAGE5O15320 804 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 MTX2O75431 263 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 PDHBP11177 359 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 SLC7A2P52569 658 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 SPIBQ01892 262 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 LY6DQ14210 128 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 EIF2B1Q14232 305 aaKnown RBP6.03□□□□□ -1.44
NUP54-215ENST00000514313 CAMK4Q16566 473 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 CCL14Q16627 93 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 TAF3Q5VWG9 929 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 APOOLQ6UXV4 268 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 TMEM184AQ6ZMB5 413 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 ZNF329Q86UD4 541 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 ART4Q93070 314 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 HSD17B14Q9BPX1 270 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 CCDC28BQ9BUN5 200 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 MEAF6Q9HAF1 191 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 DHRS7Q9Y394 339 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 AUP1Q9Y679 476 aa6.03□□□□□ -1.44
NUP54-215ENST00000514313 PPIAL4DF5H284 164 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 CLDN5O00501 218 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 SOCS3O14543 225 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 IGHG3P01860 377 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 HCKP08631 526 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 ANXA3P12429 323 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 POU3F4P49335 361 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 RGS4P49798 205 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 ATP12AP54707 1039 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 CENPPQ6IPU0 288 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 PRR5LQ6MZQ0 368 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 PRSS48Q7RTY5 328 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 DPY19L4Q7Z388 723 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 SUMF1Q8NBK3 374 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 PRSS33Q8NF86 280 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 PNPT1Q8TCS8 783 aaKnown RBP6.02□□□□□ -1.45
NUP54-215ENST00000514313 GTF3AQ92664 365 aaKnown RBP6.02□□□□□ -1.45
NUP54-215ENST00000514313 MOCOSQ96EN8 888 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 ELMO2Q96JJ3 720 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 OPRPNQ99935 248 aaPredicted RBP6.02□□□□□ -1.45
NUP54-215ENST00000514313 FAM173AQ9BQD7 235 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 KRTAP9-8Q9BYQ0 159 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 ELL3Q9HB65 397 aaPredicted RBP6.02□□□□□ -1.45
NUP54-215ENST00000514313 CIDEBQ9UHD4 219 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 SPATA2Q9UM82 520 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 RABL2BQ9UNT1 228 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 RNF6Q9Y252 685 aa6.02□□□□□ -1.45
NUP54-215ENST00000514313 MRPS7Q9Y2R9 242 aaKnown RBP6.02□□□□□ -1.45
NUP54-215ENST00000514313 EXOSC1Q9Y3B2 195 aaKnown RBP6.02□□□□□ -1.45
NUP54-215ENST00000514313 MFSD2BA6NFX1 497 aa6.01□□□□□ -1.45
NUP54-215ENST00000514313 CASKO14936 926 aa6.01□□□□□ -1.45
NUP54-215ENST00000514313 DUX1O43812 170 aa6.01□□□□□ -1.45
NUP54-215ENST00000514313 KIAA0754O94854 1291 aa6.01□□□□□ -1.45
NUP54-215ENST00000514313 HOXB7P09629 217 aa6.01□□□□□ -1.45
NUP54-215ENST00000514313 OXTRP30559 389 aa6.01□□□□□ -1.45
NUP54-215ENST00000514313 SLC1A4P43007 532 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms