RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RERGQ96A58 199 aaPredicted RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 TM4SF19Q96DZ7 209 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 IL4I1Q96RQ9 567 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 RPP25Q9BUL9 199 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 SLC38A1Q9H2H9 487 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 LYRM4Q9HD34 91 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 POT1Q9NUX5 634 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 ZNF624Q9P2J8 865 aaPredicted RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 CRNNQ9UBG3 495 aaPredicted RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 ZNF232Q9UNY5 417 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 SNRNP200O75643 2136 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 FUOMA2VDF0 154 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 AGAP5A6NIR3 686 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 OR5K4A6NMS3 321 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 M0R129 80 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 CYP7B1O75881 506 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 SOX30O94993 753 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 OR5F1O95221 314 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 RASGRP1O95267 797 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 AK1P00568 194 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 HOXB3P14651 431 aaPredicted RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 MYL12AP19105 171 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 TNNI3P19429 210 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 MMP11P24347 488 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 PSMA1P25786 263 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 LIMK1P53667 647 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 SRP54P61011 504 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 COPZ1P61923 177 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 CDK5Q00535 292 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 TSPAN31Q12999 210 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 MLLT11Q13015 90 aaPredicted RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 LARS2Q15031 903 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 SPHARQ15513 63 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 TSTQ16762 297 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 MFSD12Q6NUT3 480 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 SLC27A4Q6P1M0 643 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 ZCCHC12Q6PEW1 402 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 KIAA1324Q6UXG2 1013 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 SLC36A4Q6YBV0 504 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 RASSF6Q6ZTQ3 369 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 ZER1Q7Z7L7 766 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 PEX5LQ8IYB4 626 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 NLGN4XQ8N0W4 816 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 TCEANCQ8N8B7 351 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 PMM1Q92871 262 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 MACROD1Q9BQ69 325 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 CHCHD6Q9BRQ6 235 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 YIPF4Q9BSR8 244 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 TAPBPLQ9BX59 468 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 TSSK6Q9BXA6 273 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 SLC6A17Q9H1V8 727 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 MAN2C1Q9NTJ4 1040 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 CHCHD3Q9NX63 227 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 DNAJC27Q9NZQ0 273 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 DIMT1Q9UNQ2 313 aaKnown RBP11.24□□□□□ -0.61
NUP54-202ENST00000502850 UGT2A1Q9Y4X1 527 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 HS3ST3A1Q9Y663 406 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 LRP4O75096 1905 aa11.24□□□□□ -0.61
NUP54-202ENST00000502850 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 A6NCN8 305 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 FAM170BA6NMN3 283 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 C2orf74A8MZ97 194 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 PRR33A8MZF0 331 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 STATHP02808 62 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 THBS1P07996 1170 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 C8orf89P0DMQ9 161 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 SMIM10L1P0DMW3 83 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 UGT2B7P16662 529 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 AK4P27144 223 aaPredicted RBP11.23□□□□□ -0.61
NUP54-202ENST00000502850 STAT5AP42229 794 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 RABIFP47224 123 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 GIPRP48546 466 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 CLDN2P57739 230 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 RGS8P57771 180 aaPredicted RBP11.23□□□□□ -0.61
NUP54-202ENST00000502850 GINS1Q14691 196 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 ZNF730Q6ZMV8 503 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 PLEKHG7Q6ZR37 379 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 USP53Q70EK8 1073 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 MRGPREQ86SM8 312 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 SLC34A3Q8N130 599 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 OR52P1PQ8NH57 321 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 OSTF1Q92882 214 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 RFKQ969G6 155 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 ITPKCQ96DU7 683 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 GIMAP5Q96F15 307 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 C16orf58Q96GQ5 468 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 MSANTD3Q96H12 275 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 SMIM10Q96HG1 83 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 MRGPRX1Q96LB2 322 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 C10orf90Q96M02 699 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 OR2A14Q96R47 310 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 OR2A5Q96R48 311 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 ZFYVE21Q9BQ24 234 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 PHF7Q9BWX1 381 aaPredicted RBP11.23□□□□□ -0.61
NUP54-202ENST00000502850 GSDMCQ9BYG8 508 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 C6orf62Q9GZU0 229 aaPredicted RBP11.23□□□□□ -0.61
NUP54-202ENST00000502850 OR51E2Q9H255 320 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 MTHFD2LQ9H903 347 aaPredicted RBP11.23□□□□□ -0.61
NUP54-202ENST00000502850 SP140LQ9H930 580 aa11.23□□□□□ -0.61
NUP54-202ENST00000502850 EQTNQ9NQ60 294 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms