RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 CLYBLQ8N0X4 340 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 MARVELD2Q8N4S9 558 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 OR1J4Q8NGS1 313 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 OR2T11Q8NH01 316 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 NEIL3Q8TAT5 605 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 HGDQ93099 445 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 PKNOX2Q96KN3 472 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 PPP3R2Q96LZ3 170 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 VSTM2LQ96N03 204 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 TSSK3Q96PN8 268 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 PROK2Q9HC23 129 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 GALNT9Q9HCQ5 603 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 ACKR4Q9NPB9 350 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 ALKBH4Q9NXW9 302 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 SPRR3Q9UBC9 169 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 GPR55Q9Y2T6 319 aaPredicted RBP11.8□□□□□ -0.52
CHMP3-208ENST00000486404 CCL27Q9Y4X3 112 aa11.8□□□□□ -0.52
CHMP3-208ENST00000486404 A0A087WV62 115 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 OR6C70A6NIJ9 312 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 FAM47E-STBD1D6RA91 191 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 LSM1O15116 133 aaKnown RBP11.79□□□□□ -0.52
CHMP3-208ENST00000486404 TYROBPO43914 113 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 SNRPB2P08579 225 aaKnown RBP11.79□□□□□ -0.52
CHMP3-208ENST00000486404 GABRA1P14867 456 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 CREB1P16220 341 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 SOX18P35713 384 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 CDK9P50750 372 aaKnown RBP11.79□□□□□ -0.52
CHMP3-208ENST00000486404 NUP107P57740 925 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 PMPCAQ10713 525 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 SNTA1Q13424 505 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 ATP6AP1LQ52LC2 224 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 EMC4Q5J8M3 183 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 ANKRD26P1Q6NSI1 321 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 NPSR1Q6W5P4 371 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 NUDCD3Q8IVD9 361 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 RPRMLQ8N4K4 120 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 OR10Q1Q8NGQ4 319 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.79□□□□□ -0.52
CHMP3-208ENST00000486404 EFHD2Q96C19 240 aaPredicted RBP11.79□□□□□ -0.52
CHMP3-208ENST00000486404 AMDHD1Q96NU7 426 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 NODALQ96S42 347 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 ADOQ96SZ5 270 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 TUBB1Q9H4B7 451 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 GLIPR2Q9H4G4 154 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 REEP4Q9H6H4 257 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 Q9N2J8 555 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 EQTNQ9NQ60 294 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 TAS2R7Q9NYW3 318 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 SH3BP4Q9P0V3 963 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 MRTO4Q9UKD2 239 aaKnown RBP11.79□□□□□ -0.52
CHMP3-208ENST00000486404 RAB21Q9UL25 225 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 MAPRE3Q9UPY8 281 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 RNF6Q9Y252 685 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 NOTCH2Q04721 2471 aa11.79□□□□□ -0.52
CHMP3-208ENST00000486404 PKDREJQ9NTG1 2253 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 HCFC1P51610 2035 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 SNPHO15079 494 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 TM9SF1O15321 606 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 NME6O75414 186 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 ERLIN1O75477 346 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 HPNP05981 417 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 FGF4P08620 206 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 CT45A8P0DMV1 189 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 CT45A9P0DMV2 189 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 ENDOUP21128 410 aaKnown RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 PTGER4P35408 488 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 RPL3P39023 403 aaKnown RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 RFX3P48380 749 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 SERPINB4P48594 390 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 CDSNQ15517 529 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 DECR1Q16698 335 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 RFTN2Q52LD8 501 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 CT45A2Q5DJT8 189 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 TIGD3Q6B0B8 471 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 TMEM81Q6P7N7 255 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 Q6ZSR9 355 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 R3HCC1LQ7Z5L2 792 aaKnown RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 FNDC5Q8NAU1 212 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 CIDECQ96AQ7 238 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 ZBED6CLQ96FA7 236 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 SLC35A4Q96G79 324 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 ZNF764Q96H86 408 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 EGLN2Q96KS0 407 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 FCRL1Q96LA6 429 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 GNRHR2Q96P88 292 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 C1orf50Q9BV19 199 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 C3orf14Q9HBI5 128 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 SSU72Q9NP77 194 aaKnown RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 SERHLQ9NQF3 203 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 DKKL1Q9UK85 242 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 C19orf53Q9UNZ5 99 aaPredicted RBP11.78□□□□□ -0.52
CHMP3-208ENST00000486404 WIF1Q9Y5W5 379 aa11.78□□□□□ -0.52
CHMP3-208ENST00000486404 CELSR2Q9HCU4 2923 aa11.77□□□□□ -0.52
CHMP3-208ENST00000486404 WDR91A4D1P6 747 aa11.77□□□□□ -0.53
CHMP3-208ENST00000486404 UPK1AO00322 258 aa11.77□□□□□ -0.53
CHMP3-208ENST00000486404 PLOD2O00469 737 aa11.77□□□□□ -0.53
CHMP3-208ENST00000486404 ICOSLGO75144 302 aa11.77□□□□□ -0.53
CHMP3-208ENST00000486404 PEX11AO75192 247 aa11.77□□□□□ -0.53
CHMP3-208ENST00000486404 ZWINTO95229 277 aa11.77□□□□□ -0.53
CHMP3-208ENST00000486404 SERPINE1P05121 402 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms