RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PRAMEF25A6NGN4 478 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 NPIPB8E9PQR5 432 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 ERN1O75460 977 aaKnown RBP16.91■□□□□ 0.3
COL7A1-209ENST00000474432 KRT4P19013 534 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 CAPN3P20807 821 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 TACR1P25103 407 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 GSTM5P46439 218 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 GAS1P54826 345 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 NAA20P61599 178 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 PSG6Q00889 435 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 TESK1Q15569 626 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 FAM9CQ8IZT9 166 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 C4orf33Q8N1A6 199 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 EGLN2Q96KS0 407 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 COL21A1Q96P44 957 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 ADOQ96SZ5 270 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 OR2B2Q9GZK3 357 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 PPCSQ9HAB8 311 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 KCNN3Q9UGI6 736 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 MAPRE3Q9UPY8 281 aa16.91■□□□□ 0.3
COL7A1-209ENST00000474432 POLR3HQ9Y535 204 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-209ENST00000474432 C17orf51A8MQB3 221 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 H3BQF6 201 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 REM1O75628 298 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 RSL1D1O76021 490 aaKnown RBP16.9■□□□□ 0.3
COL7A1-209ENST00000474432 PSMG1O95456 288 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 PRPH2P23942 346 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 MPIP34949 423 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 TIMP3P35625 211 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 ZNF136P52737 540 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 PCLAFQ15004 111 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 NSUN5P2Q63ZY6 315 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 CLEC6AQ6EIG7 209 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 NOXRED1Q6NXP6 359 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 LACC1Q8IV20 430 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 C10orf107Q8IVU9 208 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 OR2T11Q8NH01 316 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 OR2W6PQ8NHA6 318 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 FAM76AQ8TAV0 307 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 ABTB1Q969K4 478 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-209ENST00000474432 SH3GL2Q99962 352 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 GATA5Q9BWX5 397 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-209ENST00000474432 TUBB1Q9H4B7 451 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 KLRF1Q9NZS2 232 aa16.9■□□□□ 0.3
COL7A1-209ENST00000474432 A0A087WV62 115 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 CD8B2A6NJW9 211 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 HSPB2A8KAH6 182 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 FAM47E-STBD1D6RA91 191 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 COPEO14579 308 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 CBR3O75828 277 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 JUNP05412 331 aaKnown RBP16.89■□□□□ 0.29
COL7A1-209ENST00000474432 UROSP10746 265 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 MC3RP41968 323 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 SNTB1Q13884 538 aaKnown RBP16.89■□□□□ 0.29
COL7A1-209ENST00000474432 TOMM20Q15388 145 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 HSPB2Q16082 182 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 LIPMQ5VYY2 423 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 Q6ZSR9 355 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 WDR53Q7Z5U6 358 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-209ENST00000474432 PM20D2Q8IYS1 436 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 CLYBLQ8N0X4 340 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 TRIM44Q96DX7 344 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-209ENST00000474432 FCRL1Q96LA6 429 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 BBS4Q96RK4 519 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 GLIPR2Q9H4G4 154 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 GIMAP4Q9NUV9 329 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 FBXL2Q9UKC9 423 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 C19orf53Q9UNZ5 99 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-209ENST00000474432 CAMK2AQ9UQM7 478 aa16.89■□□□□ 0.29
COL7A1-209ENST00000474432 WBP11Q9Y2W2 641 aaKnown RBP16.89■□□□□ 0.29
COL7A1-209ENST00000474432 MBD3L4A6NDZ8 208 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 MBD3L3A6NE82 208 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 MBD3L5A6NJ08 208 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 UPK1AO00322 258 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 SYT5O00445 386 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 PLOD2O00469 737 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 ABCB7O75027 752 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 ACTL6AO96019 429 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 CPN1P15169 458 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 NCBP2P52298 156 aaKnown RBP eCLIP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 PNLIPRP2P54317 469 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 GFRA1P56159 465 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 IMPG1Q17R60 797 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 ERCC6LQ2NKX8 1250 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 FBXL19-AS1Q494R0 122 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 CFAP157Q5JU67 520 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 LARP4Q71RC2 724 aaKnown RBP eCLIP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 ADGRE4PQ86SQ3 457 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 PLCZ1Q86YW0 608 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 SLC44A2Q8IWA5 706 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 OR2L13Q8N349 312 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 MBD3L2Q8NHZ7 208 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 CDC26Q8NHZ8 85 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 TMCO6Q96DC7 493 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 AMDHD1Q96NU7 426 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 G6PC3Q9BUM1 346 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 RTN4RQ9BZR6 473 aa16.88■□□□□ 0.29
COL7A1-209ENST00000474432 STMN4Q9H169 189 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-209ENST00000474432 RRAGDQ9NQL2 400 aaPredicted RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms