RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SENP1Q9P0U3 644 aa17.98■□□□□ 0.47
COL9A3-210ENST00000472880 NFU1Q9UMS0 254 aa17.98■□□□□ 0.47
COL9A3-210ENST00000472880 GPR55Q9Y2T6 319 aaPredicted RBP17.98■□□□□ 0.47
COL9A3-210ENST00000472880 WIF1Q9Y5W5 379 aa17.98■□□□□ 0.47
COL9A3-210ENST00000472880 DLX3O60479 287 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 CD99P14209 185 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 ATP5F1P24539 256 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-210ENST00000472880 IL12BP29460 328 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 HTR6P50406 440 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 PSPHP78330 225 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 SORDQ00796 357 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 HMGCS1Q01581 520 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 SRYQ05066 204 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 HEPACAMQ14CZ8 416 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 DAZAP2Q15038 168 aaPredicted RBP17.97■□□□□ 0.47
COL9A3-210ENST00000472880 PLCZ1Q86YW0 608 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 SLC22A9Q8IVM8 553 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 WDSUB1Q8N9V3 476 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 KAT2AQ92830 837 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 SLC35A4Q96G79 324 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 ZFP3Q96NJ6 502 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 ADOQ96SZ5 270 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 TM9SF2Q99805 663 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 ANKRA2Q9H9E1 313 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 TAS2R10Q9NYW0 307 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 DKKL1Q9UK85 242 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 PLEKHA6Q9Y2H5 1048 aa17.97■□□□□ 0.47
COL9A3-210ENST00000472880 CCDC151A5D8V7 595 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 ENO1P06733 434 aaKnown RBP17.96■□□□□ 0.47
COL9A3-210ENST00000472880 EPXP11678 715 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 IMPDH1P20839 514 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 TIA1P31483 386 aaKnown RBP eCLIP17.96■□□□□ 0.47
COL9A3-210ENST00000472880 SLCO1A2P46721 670 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 CORO7P57737 925 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 PPP2R2AP63151 447 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 RAE1P78406 368 aaKnown RBP17.96■□□□□ 0.47
COL9A3-210ENST00000472880 LCP2Q13094 533 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 EFR3AQ14156 821 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 AAGABQ6PD74 315 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 SCIMPQ6UWF3 145 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 TRIM42Q8IWZ5 723 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 FAM9CQ8IZT9 166 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 SFXN3Q9BWM7 321 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 EBPLQ9BY08 206 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 JKAMPQ9P055 326 aa17.96■□□□□ 0.47
COL9A3-210ENST00000472880 CT45A8P0DMV1 189 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 CT45A9P0DMV2 189 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 GCAP28676 217 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 SRD5A2P31213 254 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 CPA2P48052 419 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 PKNOX1P55347 436 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 CT45A2Q5DJT8 189 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 LARP4Q71RC2 724 aaKnown RBP eCLIP17.95■□□□□ 0.46
COL9A3-210ENST00000472880 TGIF2LYQ8IUE0 185 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 LINC01560Q8TB33 94 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 C16orf78Q8WTQ4 265 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 APIPQ96GX9 242 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 VSTM2LQ96N03 204 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 SFXN2Q96NB2 322 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 TMUB1Q9BVT8 246 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 SHCBP1LQ9BZQ2 653 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 ACBD3Q9H3P7 528 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 FOLH1BQ9HBA9 442 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 SLC35C2Q9NQQ7 365 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 FBXL2Q9UKC9 423 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 DOCK7Q96N67 2140 aa17.95■□□□□ 0.46
COL9A3-210ENST00000472880 CLCA1A8K7I4 914 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 TSPAN2O60636 221 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 DIAPH2O60879 1101 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 NME6O75414 186 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-210ENST00000472880 MPIP34949 423 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 GSTM5P46439 218 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 PRKAA2P54646 552 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 GFRA1P56159 465 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 MRPS22P82650 360 aaKnown RBP17.94■□□□□ 0.46
COL9A3-210ENST00000472880 BTKQ06187 659 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 ZNF155Q12901 538 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-210ENST00000472880 PAMR1Q6UXH9 720 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 NPSR1Q6W5P4 371 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 TRMT10CQ7L0Y3 403 aaKnown RBP17.94■□□□□ 0.46
COL9A3-210ENST00000472880 SLC44A2Q8IWA5 706 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-210ENST00000472880 IFT20Q8IY31 132 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 LRRN4CLQ8ND94 238 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 CDC26Q8NHZ8 85 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 WNT2BQ93097 391 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 L3HYPDHQ96EM0 354 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 ALPK1Q96QP1 1244 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 BBS4Q96RK4 519 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 YIPF4Q9BSR8 244 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 RBM24Q9BX46 236 aaKnown RBP17.94■□□□□ 0.46
COL9A3-210ENST00000472880 STMN4Q9H169 189 aaPredicted RBP17.94■□□□□ 0.46
COL9A3-210ENST00000472880 TAS2R9Q9NYW1 312 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 OR10H1Q9Y4A9 318 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 TIMM22Q9Y584 194 aa17.94■□□□□ 0.46
COL9A3-210ENST00000472880 GOLGA8RI6L899 631 aa17.93■□□□□ 0.46
COL9A3-210ENST00000472880 RIPK2O43353 540 aa17.93■□□□□ 0.46
COL9A3-210ENST00000472880 PLOD3O60568 738 aa17.93■□□□□ 0.46
COL9A3-210ENST00000472880 COQ9O75208 318 aa17.93■□□□□ 0.46
COL9A3-210ENST00000472880 RCBTB2O95199 551 aa17.93■□□□□ 0.46
COL9A3-210ENST00000472880 GOSR1O95249 250 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms