RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 CSMD1Q96PZ7 3565 aa12.39□□□□□ -0.43
HMGN1-211ENST00000471260 LRRC3CA6NJW4 275 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 GYG2O15488 501 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 SNRPB2P08579 225 aaKnown RBP12.38□□□□□ -0.43
HMGN1-211ENST00000471260 CELA3AP09093 270 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 RFPL3SP0C7P2 107 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 MYL2P10916 166 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 GPX3P22352 226 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 ABCD3P28288 659 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 FEN1P39748 380 aaKnown RBP12.38□□□□□ -0.43
HMGN1-211ENST00000471260 NUP107P57740 925 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 PSPHP78330 225 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 ACSM2AQ08AH3 577 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 MGAT2Q10469 447 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 BST1Q10588 318 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 TRMT5Q32P41 509 aaKnown RBP12.38□□□□□ -0.43
HMGN1-211ENST00000471260 CCDC153Q494R4 210 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 ACSM2BQ68CK6 577 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 GALNT18Q6P9A2 607 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 HOMEZQ8IX15 550 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 ZNF295-AS1Q8N0V1 137 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 LIX1Q8N485 282 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 OR5M9Q8NGP3 310 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 NEIL3Q8TAT5 605 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 ZNF675Q8TD23 568 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 C11orf24Q96F05 449 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-211ENST00000471260 JSRP1Q96MG2 331 aaPredicted RBP12.38□□□□□ -0.43
HMGN1-211ENST00000471260 ZNF681Q96N22 645 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 ACPTQ9BZG2 426 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 BRINP2Q9C0B6 783 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 SLC24A3Q9HC58 644 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 EHD3Q9NZN3 535 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 DCTN4Q9UJW0 460 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 UTS2RQ9UKP6 389 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 L3MBTL1Q9Y468 752 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 LRRC42Q9Y546 428 aa12.38□□□□□ -0.43
HMGN1-211ENST00000471260 MYO9AB2RTY4 2548 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 WDR91A4D1P6 747 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 PCDH7O60245 1069 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 DIAPH2O60879 1101 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 TOXO94900 526 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 SERPINE1P05121 402 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 ABCB1P08183 1280 aaPredicted RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 IGFBP2P18065 325 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 CAPN3P20807 821 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 ENDOUP21128 410 aaKnown RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 DRD5P21918 477 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 ELAVL4P26378 380 aaKnown RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 CASP3P42574 277 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 PPICP45877 212 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 ZFP36L2P47974 494 aaKnown RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 ALDH9A1P49189 494 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 FBXW4P57775 412 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 DNAJB13P59910 316 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 STX3Q13277 289 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 SNTA1Q13424 505 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 SF3B4Q15427 424 aaKnown RBP eCLIP12.37□□□□□ -0.438e-15■■■■□ 20.5
HMGN1-211ENST00000471260 CHI3L2Q15782 390 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 TCHHL1Q5QJ38 904 aaPredicted RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 ZYG11AQ6WRX3 759 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 NUP54Q7Z3B4 507 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 RPRMLQ8N4K4 120 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 OR10Q1Q8NGQ4 319 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 NTNG2Q96CW9 530 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 CNRIP1Q96F85 164 aaPredicted RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 TMEM41AQ96HV5 264 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 LCORQ96JN0 433 aaPredicted RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 RILPQ96NA2 401 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 HBEGFQ99075 208 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 CADM1Q9BY67 442 aaKnown RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 NXF5Q9H1B4 397 aaKnown RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 GSTO2Q9H4Y5 243 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 ARL8BQ9NVJ2 186 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 BCAP29Q9UHQ4 241 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 TAGLN3Q9UI15 199 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 DLGAP4Q9Y2H0 992 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 WBP11Q9Y2W2 641 aaKnown RBP12.37□□□□□ -0.43
HMGN1-211ENST00000471260 FAM215AQ9Y5M1 114 aa12.37□□□□□ -0.43
HMGN1-211ENST00000471260 GNG14A0A1W2PPG7 69 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 AHRRA9YTQ3 701 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 G3V2L1 256 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 TO15178 435 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 GSC2O15499 205 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 PPM1BO75688 479 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 SNUPNO95149 360 aaKnown RBP12.36□□□□□ -0.43
HMGN1-211ENST00000471260 CBX7O95931 251 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 HPNP05981 417 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 GLI4P10075 376 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 ATP6V1C1P21283 382 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 GDF1P27539 372 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 MSX1P28360 303 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 PRDX6P30041 224 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 TIA1P31483 386 aaKnown RBP eCLIP12.36□□□□□ -0.433e-8■■□□□ 14.2
HMGN1-211ENST00000471260 VHLP40337 213 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 MASP1P48740 699 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 RAE1P78406 368 aaKnown RBP12.36□□□□□ -0.43
HMGN1-211ENST00000471260 MRPS35P82673 323 aaKnown RBP12.36□□□□□ -0.43
HMGN1-211ENST00000471260 TFF3Q07654 80 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 CEBPEQ15744 281 aa12.36□□□□□ -0.43
HMGN1-211ENST00000471260 C1orf185Q5T7R7 199 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms