RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 MYF5P13349 255 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 GABRA3P34903 492 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 STT3AP46977 705 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 ARFIP1P53367 373 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 RACK1P63244 317 aaKnown RBP12.79□□□□□ -0.36
CLK3-203ENST00000454830 SLC35A2P78381 396 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 LARS2Q15031 903 aaKnown RBP12.79□□□□□ -0.36
CLK3-203ENST00000454830 TUBA1CQ9BQE3 449 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 TBC1D17Q9HA65 648 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 MAU2Q9Y6X3 613 aa12.79□□□□□ -0.36
CLK3-203ENST00000454830 M0R3G1 203 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 CSF2P04141 144 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 CBLP22681 906 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 HNRNPKP61978 463 aaKnown RBP eCLIP12.78□□□□□ -0.36
CLK3-203ENST00000454830 CLEC12AQ5QGZ9 265 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 CCDC103Q8IW40 242 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 CLIP4Q8N3C7 705 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 ZFAND2BQ8WV99 257 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 MYDGFQ969H8 173 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 MGAT4BQ9UQ53 548 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 GPR55Q9Y2T6 319 aaPredicted RBP12.78□□□□□ -0.36
CLK3-203ENST00000454830 IGLV3-19P01714 112 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 NUDT1P36639 197 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 CACTIN-AS1Q8N1I8 211 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 ZNF420Q8TAQ5 688 aaPredicted RBP12.78□□□□□ -0.36
CLK3-203ENST00000454830 PHOX2BQ99453 314 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 MCHR1Q99705 422 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 PINK1Q9BXM7 581 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 hCG_2014768A0A024R1R8 64 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.78□□□□□ -0.36
CLK3-203ENST00000454830 CHURC1-FNTBB4DL54 471 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 NTN1O95631 604 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 LGI1O95970 557 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 ADAP00813 363 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 DCKP27707 260 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 LRIT3Q3SXY7 679 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 PRSS58Q8IYP2 241 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 CA13Q8N1Q1 262 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 TCEANCQ8N8B7 351 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 RAB2BQ8WUD1 216 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 PITX2Q99697 317 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 UCKL1Q9NWZ5 548 aa12.78□□□□□ -0.36
CLK3-203ENST00000454830 SEC14L2O76054 403 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 NME1P15531 152 aaKnown RBP12.77□□□□□ -0.36
CLK3-203ENST00000454830 BCKDHBP21953 392 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 CLK1P49759 484 aaKnown RBP12.77□□□□□ -0.36
CLK3-203ENST00000454830 ST3GAL4Q11206 333 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 NDUFA9Q16795 377 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 FAR1Q8WVX9 515 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 APH1BQ8WW43 257 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 TRNT1Q96Q11 434 aaKnown RBP12.77□□□□□ -0.36
CLK3-203ENST00000454830 BCL2L10Q9HD36 194 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 CNIH4Q9P003 139 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 A4GNTQ9UNA3 340 aa12.77□□□□□ -0.36
CLK3-203ENST00000454830 MRPS33Q9Y291 106 aaKnown RBP12.77□□□□□ -0.36
CLK3-203ENST00000454830 GKN3PP0CG01 181 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 OSMP13725 252 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 KCNAB1Q14722 419 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 TSSK4Q6SA08 328 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 RBM12BQ8IXT5 1001 aaKnown RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 IPCEF1Q8WWN9 437 aaPredicted RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 CDX2Q99626 313 aaPredicted RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 DUSP21Q9H596 190 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 POU3F3P20264 500 aaPredicted RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 MASP1P48740 699 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 HMGA2P52926 109 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 GP2P55259 537 aaKnown RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 CXCR4P61073 352 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 SKP1P63208 163 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 MAP4K2Q12851 820 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 TUBA3CQ13748 450 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 ZNF267Q14586 743 aaPredicted RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 PUS10Q3MIT2 529 aaKnown RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 PGBD2Q6P3X8 592 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 RNF44Q7L0R7 432 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 BCDIN3DQ7Z5W3 292 aaKnown RBP12.77□□□□□ -0.37
CLK3-203ENST00000454830 RHOXF1Q8NHV9 184 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 MUL1Q969V5 352 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 LYRM4Q9HD34 91 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 ZNF226Q9NYT6 803 aa12.77□□□□□ -0.37
CLK3-203ENST00000454830 SH3PXD2BA1X283 911 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 KPNA4O00629 521 aaPredicted RBP12.76□□□□□ -0.37
CLK3-203ENST00000454830 SMIM10L1P0DMW3 83 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 ACP2P11117 423 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 MLLT10P55197 1068 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 MVKQ03426 396 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 MED22Q15528 200 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 SMIM10Q96HG1 83 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 PRRC1Q96M27 445 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 TAS2R16Q9NYV7 291 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 IL20RAQ9UHF4 553 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 LOC100506127A0A0U1RQW1 187 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 A8MUA0 341 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 CASC3O15234 703 aaKnown RBP12.76□□□□□ -0.37
CLK3-203ENST00000454830 CNOT3O75175 753 aaKnown RBP12.76□□□□□ -0.37
CLK3-203ENST00000454830 CH25HO95992 272 aa12.76□□□□□ -0.37
CLK3-203ENST00000454830 RNH1P13489 461 aaKnown RBP12.76□□□□□ -0.37
CLK3-203ENST00000454830 JUNBP17275 347 aaPredicted RBP12.76□□□□□ -0.37
CLK3-203ENST00000454830 ITIH1P19827 911 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms