RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SDHBP21912 280 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 MMP11P24347 488 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 HTR1EP28566 365 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 RPS15P62841 145 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 Q0VFX4 171 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 BIKQ13323 160 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 RIPK1Q13546 671 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 CCNIQ14094 377 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 TRIM25Q14258 630 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 PUM1Q14671 1186 aaKnown RBP eCLIP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 KPNB1Q14974 876 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 CYP51A1Q16850 503 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 VMACQ2NL98 169 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 CT45A2Q5DJT8 189 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 CCNJQ5T5M9 372 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 C1orf146Q5VVC0 180 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 VASH1Q7L8A9 365 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ZAR1Q86SH2 424 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 SLC44A2Q8IWA5 706 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 IL22RA1Q8N6P7 574 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 HIPK4Q8NE63 616 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 OR10Q1Q8NGQ4 319 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 OR1N1Q8NGS0 311 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ADAMTS17Q8TE56 1095 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 SLC38A5Q8WUX1 472 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 JADE3Q92613 823 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 RNF166Q96A37 237 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ADIPOR1Q96A54 375 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 MOAP1Q96BY2 351 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ZG16BQ96DA0 208 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 NAF1Q96HR8 494 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 IMMP1LQ96LU5 166 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 SH3GL1Q99961 368 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 PELOQ9BRX2 385 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ELOVL7A1L3X0 281 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 TMEM229AB2RXF0 380 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ERVH48-1M5A8F1 160 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ARPC2O15144 300 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 FCMRO60667 390 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ATP6V1G2O95670 118 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 IGKV1D-16P01601 117 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 BCHEP06276 602 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 CHRM4P08173 479 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 IFI6P09912 130 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ARAFP10398 606 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 GGT1P19440 569 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 PPIBP23284 216 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 AQP1P29972 269 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 GABRA3P34903 492 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 SLC26A5P58743 744 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ZNF155Q12901 538 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 FADDQ13158 208 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 MYBPC3Q14896 1274 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 GCNT6Q5T4J0 391 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 GLYATQ6IB77 296 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 LSRQ86X29 649 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 PTRH1Q86Y79 214 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 SPPL2CQ8IUH8 684 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 LGI4Q8N135 537 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 MORN4Q8NDC4 146 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 OR14A16Q8NHC5 309 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 FIG4Q92562 907 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 DAZLQ92904 295 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 REXO5Q96IC2 774 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 SEMA4CQ9C0C4 833 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 ZNF700Q9H0M5 742 aa10.18□□□□□ -0.78
SCN9A-205ENST00000454569 NXF5Q9H1B4 397 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 SUCOQ9UBS9 1254 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 FAF1Q9UNN5 650 aaPredicted RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 PPIEQ9UNP9 301 aaKnown RBP10.18□□□□□ -0.78
SCN9A-205ENST00000454569 CENPVL1A0A0U1RR11 272 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 A8MVJ9 347 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 C21orf140B9A014 251 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 CXCR6O00574 342 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 EFSO43281 561 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 MAN1A2O60476 641 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 ENTPD5O75356 428 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 CREG1O75629 220 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 BCAS2O75934 225 aaPredicted RBP10.17□□□□□ -0.78
SCN9A-205ENST00000454569 SLITRK5O94991 958 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 NKX2-2O95096 273 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 LIPCP11150 499 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 CD82P27701 267 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 PRIM2P49643 509 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 CLN3Q13286 438 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 SCARB2Q14108 478 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 SSPNQ14714 243 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 EBPQ15125 230 aaKnown RBP10.17□□□□□ -0.78
SCN9A-205ENST00000454569 TBC1D25Q3MII6 688 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 HEPHL1Q6MZM0 1159 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 FIGNL1Q6PIW4 674 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 RNF111Q6ZNA4 994 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 PRR22Q8IZ63 422 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 FAM86B1Q8N7N1 296 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 B3GNT7Q8NFL0 401 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 OR7G1Q8NGA0 311 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 ADAMTS15Q8TE58 950 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 THAP3Q8WTV1 239 aaPredicted RBP10.17□□□□□ -0.78
SCN9A-205ENST00000454569 STMN2Q93045 179 aa10.17□□□□□ -0.78
SCN9A-205ENST00000454569 ASB9Q96DX5 294 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms