RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 SNPHO15079 494 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 TRAPPC6AO75865 159 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 FGF4P08620 206 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 IFI6P09912 130 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 MSX1P28360 303 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 CORO7P57737 925 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 WDR93Q6P2C0 686 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 ANGPTL8Q6UXH0 198 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 NPSR1Q6W5P4 371 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 MEX3BQ6ZN04 569 aaKnown RBP17.7■□□□□ 0.42
USP40-207ENST00000450940 SEM1Q6ZVN7 128 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 OR10Q1Q8NGQ4 319 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 TMCO6Q96DC7 493 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 ZNF764Q96H86 408 aaPredicted RBP17.7■□□□□ 0.42
USP40-207ENST00000450940 PRDM14Q9GZV8 571 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 TUBB1Q9H4B7 451 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 MIEF1Q9NQG6 463 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 C1orf109Q9NX04 203 aa17.7■□□□□ 0.42
USP40-207ENST00000450940 C19orf53Q9UNZ5 99 aaPredicted RBP17.7■□□□□ 0.42
USP40-207ENST00000450940 C15orf38-AP3S2A0A0A6YYH1 394 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 PRAMEF25A6NGN4 478 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 FAM90A27PA6NNH2 459 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 ENO4A6NNW6 628 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 GNB5O14775 395 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 RGS14O43566 566 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 SEC22BO75396 215 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 NME6O75414 186 aaPredicted RBP17.69■□□□□ 0.42
USP40-207ENST00000450940 REM1O75628 298 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 PSMG1O95456 288 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 EPPINO95925 133 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 PNLIPRP2P54317 469 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 KANK2Q63ZY3 851 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 EMBQ6PCB8 327 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 LIX1LQ8IVB5 337 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 PM20D2Q8IYS1 436 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 WDSUB1Q8N9V3 476 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 CAVIN3Q969G5 261 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 EGLN2Q96KS0 407 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 LURAP1Q96LR2 239 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 AMDHD1Q96NU7 426 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 IQCGQ9H095 443 aaKnown RBP17.69■□□□□ 0.42
USP40-207ENST00000450940 GLIPR2Q9H4G4 154 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 LRTM1Q9HBL6 345 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 GALNT9Q9HCQ5 603 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 ALKBH4Q9NXW9 302 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 CSMD1Q96PZ7 3565 aa17.69■□□□□ 0.42
USP40-207ENST00000450940 NPHS1O60500 1241 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 TBX19O60806 448 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 COQ9O75208 318 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 CBR3O75828 277 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 JUNP05412 331 aaKnown RBP17.68■□□□□ 0.42
USP40-207ENST00000450940 NEFHP12036 1026 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 BMP7P18075 431 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 TACR1P25103 407 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 ALDH3A1P30838 453 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 CEACAM8P31997 349 aaPredicted RBP17.68■□□□□ 0.42
USP40-207ENST00000450940 NCBP2P52298 156 aaKnown RBP eCLIP17.68■□□□□ 0.42
USP40-207ENST00000450940 PSG6Q00889 435 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 EFR3AQ14156 821 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 UGT3A2Q3SY77 523 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 EIPR1Q53HC9 387 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 DMRTC2Q8IXT2 367 aaPredicted RBP17.68■□□□□ 0.42
USP40-207ENST00000450940 OR2L13Q8N349 312 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 FAM83FQ8NEG4 500 aaPredicted RBP17.68■□□□□ 0.42
USP40-207ENST00000450940 OR2T11Q8NH01 316 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 CDC26Q8NHZ8 85 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 ADOQ96SZ5 270 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 TMEM109Q9BVC6 243 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 UGT2B28Q9BY64 529 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 OR2B2Q9GZK3 357 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 KLRF1Q9NZS2 232 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 SLC6A5Q9Y345 797 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 DNAJC15Q9Y5T4 150 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 PTGDR2Q9Y5Y4 395 aa17.68■□□□□ 0.42
USP40-207ENST00000450940 MED12Q93074 2177 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 C2orf72A6NCS6 295 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 UPK1AO00322 258 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 ACTL6AO96019 429 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 NTSP30990 170 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 TIMP3P35625 211 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 MC3RP41968 323 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 GAS1P54826 345 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 SF3B4Q15427 424 aaKnown RBP eCLIP17.67■□□□□ 0.42
USP40-207ENST00000450940 SLC25A35Q3KQZ1 300 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 CYP27C1Q4G0S4 372 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 ACSF3Q4G176 576 aaPredicted RBP17.67■□□□□ 0.42
USP40-207ENST00000450940 WIPI1Q5MNZ9 446 aaPredicted RBP17.67■□□□□ 0.42
USP40-207ENST00000450940 LARP4Q71RC2 724 aaKnown RBP eCLIP17.67■□□□□ 0.42
USP40-207ENST00000450940 SLC44A2Q8IWA5 706 aaPredicted RBP17.67■□□□□ 0.42
USP40-207ENST00000450940 ELP4Q96EB1 424 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 WDYHV1Q96HA8 205 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 FAM111AQ96PZ2 611 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 CCT7Q99832 543 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 SENP1Q9P0U3 644 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 SLC17A7Q9P2U7 560 aa17.67■□□□□ 0.42
USP40-207ENST00000450940 MRPS18CQ9Y3D5 142 aaKnown RBP17.67■□□□□ 0.42
USP40-207ENST00000450940 HSPB2A8KAH6 182 aa17.66■□□□□ 0.42
USP40-207ENST00000450940 KRT20P35900 424 aa17.66■□□□□ 0.42
USP40-207ENST00000450940 MRPS22P82650 360 aaKnown RBP17.66■□□□□ 0.42
USP40-207ENST00000450940 IFFO1Q0D2I5 559 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms