RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 A8MV72 311 aaPredicted RBP11.09□□□□□ -0.63
CD44-209ENST00000433892 AVPR1BP47901 424 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 ANXA11P50995 505 aaKnown RBP11.09□□□□□ -0.63
CD44-209ENST00000433892 CAV3P56539 151 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 UBE3AQ05086 875 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 FGL2Q14314 439 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 GNA13Q14344 377 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 PLK5Q496M5 336 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 GLYR1Q49A26 553 aaPredicted RBP11.09□□□□□ -0.63
CD44-209ENST00000433892 ATAD3CQ5T2N8 411 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 SLC36A4Q6YBV0 504 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 ZNF730Q6ZMV8 503 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 LHFPL3Q86UP9 236 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 TMEM145Q8NBT3 493 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 ANKK1Q8NFD2 765 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 OR52E1Q8NGJ3 308 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 OR9A2Q8NGT5 310 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 SP7Q8TDD2 431 aaPredicted RBP11.09□□□□□ -0.63
CD44-209ENST00000433892 JPH3Q8WXH2 748 aaPredicted RBP11.09□□□□□ -0.63
CD44-209ENST00000433892 DIRAS2Q96HU8 199 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 MMP28Q9H239 520 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 SLC38A1Q9H2H9 487 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 MOV10Q9HCE1 1003 aaKnown RBP11.09□□□□□ -0.63
CD44-209ENST00000433892 SPHK1Q9NYA1 384 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 ZNF221Q9UK13 617 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 SLC13A4Q9UKG4 626 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 NTNG1Q9Y2I2 539 aa11.09□□□□□ -0.63
CD44-209ENST00000433892 SNRNP200O75643 2136 aaKnown RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 UBXN7O94888 489 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 EIF2S1P05198 315 aaKnown RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 PKLRP30613 574 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 SSTR4P31391 388 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 TRHRP34981 398 aaPredicted RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 SLC9A3P48764 834 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 PRR5P85299 388 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 TGM3Q08188 693 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 PDGFRLQ15198 375 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 MRM1Q6IN84 353 aaKnown RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 TYW3Q6IPR3 259 aaKnown RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 RRM2BQ7LG56 351 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 RAB43Q86YS6 212 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 CLDN22Q8N7P3 220 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 NUP43Q8NFH3 380 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 OR56A1Q8NGH5 318 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 OR2L8Q8NGY9 312 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 SFXN5Q8TD22 340 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 GNPDA2Q8TDQ7 276 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 KAT2AQ92830 837 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 FGF13Q92913 245 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 SMARCD2Q92925 531 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 MSLNLQ96KJ4 702 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 KATNB1Q9BVA0 655 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 FGF20Q9NP95 211 aaPredicted RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 NPAP1Q9NZP6 1156 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 THAP10Q9P2Z0 257 aaPredicted RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 CES1P1Q9UKY3 287 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 SF3B6Q9Y3B4 125 aaKnown RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 CHST2Q9Y4C5 530 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 N6AMT1Q9Y5N5 214 aa11.08□□□□□ -0.64
CD44-209ENST00000433892 SPTBN5Q9NRC6 3674 aaKnown RBP11.08□□□□□ -0.64
CD44-209ENST00000433892 DENND4AQ7Z401 1863 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 A0A1W2PP55 124 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 TMEM129A0AVI4 362 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 LINC01553A4QN01 128 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 SLC30A4O14863 429 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 FCMRO60667 390 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 TMCC2O75069 709 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 ALPPP05187 535 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 LIMS3P0CW19 117 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 LIMS4P0CW20 117 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 F3P13726 295 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 CSNK2A2P19784 350 aaPredicted RBP11.07□□□□□ -0.64
CD44-209ENST00000433892 PTNP21246 168 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 TCEA1P23193 301 aaKnown RBP11.07□□□□□ -0.64
CD44-209ENST00000433892 MPIP34949 423 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 SOX18P35713 384 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 TRIM23P36406 574 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 FABP5Q01469 135 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 SCN1BQ07699 218 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 TSPAN31Q12999 210 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 TCEA2Q15560 299 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 LTB4RQ15722 352 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 CST6Q15828 149 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 MINDY4Q4G0A6 757 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 SLC30A6Q6NXT4 461 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 SLC48A1Q6P1K1 146 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 UBE2J2Q8N2K1 259 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 HDDC3Q8N4P3 179 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 OR2L5Q8NG80 312 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 OR2L3Q8NG85 312 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 OR52P1PQ8NH57 321 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 UFD1Q92890 307 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 SLC38A2Q96QD8 506 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 C6orf106Q9H6K1 298 aaPredicted RBP11.07□□□□□ -0.64
CD44-209ENST00000433892 POLMQ9NP87 494 aaPredicted RBP11.07□□□□□ -0.64
CD44-209ENST00000433892 DDX28Q9NUL7 540 aaKnown RBP11.07□□□□□ -0.64
CD44-209ENST00000433892 MRPS18AQ9NVS2 196 aaKnown RBP11.07□□□□□ -0.64
CD44-209ENST00000433892 IL20RAQ9UHF4 553 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 GRIP1Q9Y3R0 1128 aa11.07□□□□□ -0.64
CD44-209ENST00000433892 SNTNA6NMZ2 147 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms