RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 FOXE1O00358 373 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 SDHDO14521 159 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 KHDRBS3O75525 346 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 CPNE6O95741 557 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MT-ND2P03891 347 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CRYGBP07316 175 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CT62P0C5K7 136 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CDK4P11802 303 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 HNRNPH3P31942 346 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 CAPGP40121 348 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 HAAOP46952 286 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CSRP3P50461 194 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 DNA2P51530 1060 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CARD18P57730 90 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MYBPC1Q00872 1141 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SULT2A1Q06520 285 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 TGM3Q08188 693 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 TMEM52BQ4KMG9 183 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ARHGEF16Q5VV41 709 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SLC18B1Q6NT16 456 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 P4HA3Q7Z4N8 544 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MYOCDQ8IZQ8 938 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CLIP4Q8N3C7 705 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 PQLC3Q8N755 202 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FAM71CQ8NEG0 241 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FGFBP3Q8TAT2 258 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 OR1E3Q8WZA6 343 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ANP32BQ92688 251 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 COQ8BQ96D53 544 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 RHNO1Q9BSD3 238 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CXXC4Q9H2H0 198 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 RGS18Q9NS28 235 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 EURLQ9NYK6 297 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CRLS1Q9UJA2 301 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FZD10Q9ULW2 581 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SPACA6W5XKT8 324 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ZNF106Q9H2Y7 1883 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 STK36Q9NRP7 1315 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CHD7Q9P2D1 2997 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 BRCA2P51587 3418 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CHD6Q8TD26 2715 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 TEX13DA0A0J9YY54 714 aaPredicted RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 ANKRD66B4E2M5 251 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 INAFM1C9JVW0 142 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 DEXIO95424 95 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 GNA14O95837 355 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 WDPCPO95876 746 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 NDUFB10O96000 172 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 CTSAP10619 480 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 NCF2P19878 526 aaPredicted RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 HNF1AP20823 631 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 UCP1P25874 307 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ALDH4A1P30038 563 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ADRA1AP35348 466 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 LEPRP48357 1165 aaKnown RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 SLC1A6P48664 564 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 FNTAP49354 379 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 RARRES1P49788 294 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 MYL6P60660 151 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 HSF2Q03933 536 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 CSTF1Q05048 431 aaKnown RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 EFTUD2Q15029 972 aaKnown RBP eCLIP2.31□□□□□ -2.04
MCF2-204ENST00000414978 FAM174BQ3ZCQ3 159 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 SMUG1Q53HV7 270 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 KDM7AQ6ZMT4 941 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 TRMT1LQ7Z2T5 733 aaKnown RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 C1QL4Q86Z23 238 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 OFCC1Q8IZS5 231 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 CENPLQ8N0S6 344 aaPredicted RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 SLC38A9Q8NBW4 561 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 PRSS3P2Q8NHM4 247 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 IRGQQ8WZA9 623 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 DYNLL2Q96FJ2 89 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 GAL3ST1Q99999 423 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ETNK2Q9NVF9 386 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 SMOXQ9NWM0 555 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 COX16Q9P0S2 106 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 SPATA7Q9P0W8 599 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 KIAA1257Q9ULG3 409 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 V9GYY5 206 aaPredicted RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 NYNRINQ9P2P1 1898 aaKnown RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 MYH9P35579 1960 aaKnown RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 ATG2BQ96BY7 2078 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 A0A1B0GTQ1 180 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 A0A1W2PPV9 198 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 H3BNX3 289 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ABCD4O14678 606 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ANXA8P13928 327 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 CALB2P22676 271 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 UGT1A5P35504 534 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ABCG1P45844 678 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 POU3F4P49335 361 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ACADVLP49748 655 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 HERC3Q15034 1050 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 STK38Q15208 465 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 NPTX1Q15818 432 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 ANXA8L1Q5VT79 327 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 FAM159AQ6UWV7 190 aa2.31□□□□□ -2.04
MCF2-204ENST00000414978 TMCO2Q7Z6W1 182 aaPredicted RBP2.31□□□□□ -2.04
MCF2-204ENST00000414978 MUC20Q8N307 709 aaPredicted RBP2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms