RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 SNX13Q9Y5W8 968 aa13.22□□□□□ -0.29
SF3B1-204ENST00000414963 KCNE3Q9Y6H6 103 aa13.22□□□□□ -0.29
SF3B1-204ENST00000414963 NSG1A0A0A6YYJ2 146 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 C2orf92A0A1B0GVN3 265 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 PRAMEF27A3QJZ7 478 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 TO15178 435 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 CIB2O75838 187 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 ZFAND5O76080 213 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 ADRB1P08588 477 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 HOXD11P31277 338 aaPredicted RBP13.21□□□□□ -0.29
SF3B1-204ENST00000414963 MSX2P35548 267 aaPredicted RBP13.21□□□□□ -0.29
SF3B1-204ENST00000414963 CLCN2P51788 898 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 RNF4P78317 190 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 CDK6Q00534 326 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 SCARB2Q14108 478 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 ARHGAP11BQ3KRB8 267 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 CYP27C1Q4G0S4 372 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 CRTC2Q53ET0 693 aaPredicted RBP13.21□□□□□ -0.29
SF3B1-204ENST00000414963 REEP3Q6NUK4 255 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 NPSR1Q6W5P4 371 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 CCDC80Q76M96 950 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 SLC29A4Q7RTT9 530 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 FAM13CQ8NE31 585 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 HIPK4Q8NE63 616 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 OR5L2Q8NGL0 311 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 SNIP1Q8TAD8 396 aaKnown RBP13.21□□□□□ -0.29
SF3B1-204ENST00000414963 NUBPLQ8TB37 319 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 FAM110BQ8TC76 370 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 GPR151Q8TDV0 419 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 SLC9A6Q92581 669 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 JADE3Q92613 823 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 PMM1Q92871 262 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 MAL2Q969L2 176 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 ITPAQ9BY32 194 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 WWTR1Q9GZV5 400 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 PCDHAC1Q9H158 963 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 BCL2L10Q9HD36 194 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 RYDENQ9NUL5 291 aaKnown RBP13.21□□□□□ -0.29
SF3B1-204ENST00000414963 P4HTMQ9NXG6 502 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 MAGEL2Q9UJ55 1249 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 DTX4Q9Y2E6 619 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 MRPS18BQ9Y676 258 aaKnown RBP13.21□□□□□ -0.29
SF3B1-204ENST00000414963 CCDC88CQ9P219 2028 aa13.21□□□□□ -0.29
SF3B1-204ENST00000414963 SPTBN2O15020 2390 aa13.21□□□□□ -0.3
SF3B1-204ENST00000414963 TMEM247A6NEH6 219 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 FRG2CA6NGY1 282 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 A8MVJ9 347 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 CXCR6O00574 342 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 PEX12O00623 359 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 GSTA4O15217 222 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 ACOX3O15254 700 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 GCM2O75603 506 aaPredicted RBP13.2□□□□□ -0.3
SF3B1-204ENST00000414963 NR2F1P10589 423 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 TRHRP34981 398 aaPredicted RBP13.2□□□□□ -0.3
SF3B1-204ENST00000414963 PCBP3P57721 371 aaKnown RBP13.2□□□□□ -0.3
SF3B1-204ENST00000414963 CORO7P57737 925 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 FUT5Q11128 374 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 INTS11Q5TA45 600 aaKnown RBP13.2□□□□□ -0.3
SF3B1-204ENST00000414963 GLYATQ6IB77 296 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 LCN8Q6JVE9 175 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 LRRC74BQ6ZQY2 392 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 WDR53Q7Z5U6 358 aaPredicted RBP13.2□□□□□ -0.3
SF3B1-204ENST00000414963 DHFR2Q86XF0 187 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 ARMC10Q8N2F6 343 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 COX18Q8N8Q8 333 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 NFKBIDQ8NI38 313 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 FBXO30Q8TB52 745 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 CDS1Q92903 461 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 CCDC124Q96CT7 223 aaKnown RBP13.2□□□□□ -0.3
SF3B1-204ENST00000414963 LCORQ96JN0 433 aaPredicted RBP13.2□□□□□ -0.3
SF3B1-204ENST00000414963 SDF2Q99470 211 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 DPH1Q9BZG8 443 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 Q9N2J8 555 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 POLE3Q9NRF9 147 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 CALML5Q9NZT1 146 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 EGFL7Q9UHF1 273 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 FBXL4Q9UKA2 621 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 SSUH2Q9Y2M2 353 aa13.2□□□□□ -0.3
SF3B1-204ENST00000414963 A0A0G2JPF8 293 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 TRBV11-1A0A0K0K1C0 115 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 TMEM200CA6NKL6 621 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 HNRNPCL2B2RXH8 293 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 HNRNPCL3B7ZW38 293 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 ARPC2O15144 300 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 GMNNO75496 209 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 KCNK2O95069 426 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 PGM3O95394 542 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 SERPINA7P05543 415 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 HNRNPCL4P0DMR1 293 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 KDELR2P33947 212 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 PIGAP37287 484 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 CRISP3P54108 245 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 POLE2P56282 527 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 ACTR3P61158 418 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 AP2B1P63010 937 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 POU6F2P78424 691 aaPredicted RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 ELOAQ14241 798 aaKnown RBP13.19□□□□□ -0.3
SF3B1-204ENST00000414963 FLOT2Q14254 428 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 SYPL1Q16563 259 aa13.19□□□□□ -0.3
SF3B1-204ENST00000414963 BTBD16Q32M84 506 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms