RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 ARL6IP1Q15041 203 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ZNF404Q494X3 552 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 PAGE3Q5JUK9 113 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CBLL1Q75N03 491 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 PROKR1Q8TCW9 393 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 DIO2Q92813 273 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MS4A8Q9BY19 250 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 SLC6A16Q9GZN6 736 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 KLHL31Q9H511 634 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CUTCQ9NTM9 273 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 GNG8Q9UK08 70 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 SARDHQ9UL12 918 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 FTCDNL1E5RQL4 147 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 SDC3O75056 442 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CRABP1P29762 137 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MOGQ16653 247 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CNPY1Q3B7I2 92 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 PROX2Q3B8N5 592 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 PARM1Q6UWI2 310 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 GPAT4Q86UL3 456 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 TRIM73Q86UV7 250 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ADIPOR2Q86V24 386 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 DTWD1Q8N5C7 304 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 OR5M3Q8NGP4 307 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MZB1Q8WU39 189 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 BCL7CQ8WUZ0 217 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CNN2Q99439 309 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MRI1Q9BV20 369 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MED28Q9H204 178 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 TESQ9UGI8 421 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 RIMS3Q9UJD0 308 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 COL4A5P29400 1685 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 TMEM265A0A087WTH1 108 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 RDH16O75452 317 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 KDM4BO94953 1096 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 OLFM2O95897 454 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MT-ND2P03891 347 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ARAFP10398 606 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CTBP2P56545 445 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ZNF45Q02386 682 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 DLX2Q07687 328 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CWF19L1Q69YN2 538 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 DUS1LQ6P1R4 473 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 CCDC36Q8IYA8 594 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 RNF113BQ8IZP6 322 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 PARP8Q8N3A8 854 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 GTF2H4Q92759 462 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 S100A16Q96FQ6 103 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 DNAJC27Q9NZQ0 273 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 TCRBV3S1A0A5B6 114 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 LATO43561 262 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 FOXD2O60548 495 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 HMGN2P05204 90 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MC3RP41968 323 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MC1RQ01726 317 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MXD1Q05195 221 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ULK3Q6PHR2 472 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ZNF675Q8TD23 568 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 NANOS1Q8WY41 292 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MAELQ96JY0 434 aaKnown RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 LINC00615Q96LM1 132 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-205ENST00000414879 FEVQ99581 238 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 TBX5Q99593 518 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 TRIM8Q9BZR9 551 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 ABCB9Q9NP78 766 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 UBQLN4Q9NRR5 601 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 MBD2Q9UBB5 411 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 RHCGQ9UBD6 479 aa11.3□□□□□ -0.6
PTPRF-205ENST00000414879 GOLGA4Q13439 2230 aaKnown RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 ATAD5Q96QE3 1844 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 TRBV5-4A0A0C4DH59 114 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 SNAP29O95721 258 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 CH25HO95992 272 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 DAP3P51398 398 aaKnown RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 FIGNL1Q6PIW4 674 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 GALNT15Q8N3T1 639 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 SLC44A3Q8N4M1 653 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 FBXL20Q96IG2 436 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 DPH2Q9BQC3 489 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 LYRM4Q9HD34 91 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 RXFP3Q9NSD7 469 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 A0A0A6YYC8 382 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 H0YGG7 62 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 I3L1I5 382 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 LRRTM2O43300 516 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 EGFP01133 1207 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 H2BFMP0C1H6 154 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 TPMTP51580 245 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 PGGT1BP53609 377 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 ADPRHP54922 357 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 CXCR4P61073 352 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 ARF3P61204 181 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 ZNF829Q3KNS6 432 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 PRSS48Q7RTY5 328 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 UBE2J2Q8N2K1 259 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 ZSCAN4Q8NAM6 433 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-205ENST00000414879 OR7G1Q8NGA0 311 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 OR6N2Q8NGY6 317 aa11.29□□□□□ -0.6
PTPRF-205ENST00000414879 ACOT11Q8WXI4 607 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms