RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 IDNKQ5T6J7 187 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 NCBP2-AS2Q69YL0 99 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SKA3Q8IX90 412 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PIAS4Q8N2W9 510 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 MARVELD2Q8N4S9 558 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 FAM71E2Q8N5Q1 922 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 DDIT4LQ96D03 193 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 VRK1Q99986 396 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 HOPXQ9BPY8 73 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 EBPLQ9BY08 206 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 YTHDF1Q9BYJ9 559 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 REEP4Q9H6H4 257 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SLCO1B3Q9NPD5 702 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 DECR2Q9NUI1 292 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 COMMD3Q9UBI1 195 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 EBF1Q9UH73 591 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 DRGXA6NNA5 263 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 RTCAO00442 366 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM63AO94886 807 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 NMBRP28336 390 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SSTR1P30872 391 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR3A3P47888 321 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR3A2P47893 321 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 MALLQ13021 153 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF630Q2M218 657 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TIGD2Q4W5G0 525 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 CLVS2Q5SYC1 327 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ALKAL1Q6UXT8 129 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 LARP4Q71RC2 724 aaKnown RBP eCLIP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 HSD11B1LQ7Z5J1 315 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SIRT6Q8N6T7 355 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR2A12Q8NGT7 310 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PLEKHO2Q8TD55 490 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TESCQ96BS2 214 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR52E6Q96RD3 313 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ALOXE3Q9BYJ1 711 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 RPF2Q9H7B2 306 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 NINJ2Q9NZG7 142 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 DLGAP4Q9Y2H0 992 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 MYH14Q7Z406 1995 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 hCG_1807616A0A1W2PRN6 198 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 NRP2O60462 931 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OXSR1O95747 527 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PCSK2P16519 638 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 APLNRP35414 380 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 FABP6P51161 128 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PPP5CP53041 499 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TXNL4AP83876 142 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 MPP1Q00013 466 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 KLRB1Q12918 225 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 GPR19Q15760 415 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR52E8Q6IFG1 317 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF730Q6ZMV8 503 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF550Q7Z398 422 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PDZD3Q86UT5 571 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 KMT5CQ86Y97 462 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 GHDCQ8N2G8 530 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM105Q8N8V8 129 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM102Q8N9M5 508 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 OR5T2Q8NGG2 359 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 PROKR1Q8TCW9 393 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ASB5Q8WWX0 329 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZUFSPQ96AP4 578 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM68Q96MH6 324 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 SERINC2Q96SA4 455 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 BRF2Q9HAW0 419 aa6.92□□□□□ -1.3
SCN9A-202ENST00000409435 ZCCHC3Q9NUD5 404 aaKnown RBP6.92□□□□□ -1.3
SCN9A-202ENST00000409435 MYH3P11055 1940 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PRORSD1PA6NEY8 169 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PRRT4C9JH25 899 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SGK494L7N484 410 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 RNF225M0QZC1 329 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SOX30O94993 753 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CCR2P41597 374 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PPIAP62937 165 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CSNK2A1P68400 391 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MRPS10P82664 201 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 NHLH1Q02575 133 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MZT1Q08AG7 82 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ST3GAL1Q11201 340 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PAFAH1B3Q15102 231 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CTC1Q2NKJ3 1217 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF705AQ6ZN79 300 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SCML4Q8N228 414 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SVOPLQ8N434 492 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 ANKFN1Q8N957 763 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 OR56A1Q8NGH5 318 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CNTNAP3BQ96NU0 1288 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 CIB1Q99828 191 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 TGIF2Q9GZN2 237 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 MKRN2Q9H000 416 aaKnown RBP6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SEMA6CQ9H3T2 930 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM9Q9P0T7 183 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 HS3ST2Q9Y278 367 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PCDHGB6Q9Y5F9 930 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 OR51F1A6NGY5 319 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 BOLA2-SMG1P6H3BVE0 249 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 EPHB6O15197 1021 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 SUV39H1O43463 412 aa6.91□□□□□ -1.3
SCN9A-202ENST00000409435 PRAMEF2O60811 474 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms