RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 LIPKQ5VXJ0 399 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PM20D1Q6GTS8 502 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF765Q7L2R6 523 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 RETREG3Q86VR2 466 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PLXDC1Q8IUK5 500 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 GPR137CQ8N3F9 429 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 CLDN22Q8N7P3 220 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 OR5AK3PQ8NH89 298 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 NPLOC4Q8TAT6 608 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 DEDD2Q8WXF8 326 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 DEFB126Q9BYW3 111 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 C11orf49Q9H6J7 331 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PAQR5Q9NXK6 330 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PCTPQ9UKL6 214 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 ETV7Q9Y603 341 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 MED1Q15648 1581 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 C20orf202A1L168 122 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 BTBD17A6NE02 478 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 C12orf71A8MTZ7 269 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 SEC14L5O43304 696 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 AK4P27144 223 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PYCR1P32322 319 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 LUMP51884 338 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PRAMEF8Q5VWM4 474 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 MLIPQ5VWP3 458 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PRAMEF7Q5VXH5 474 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 DCBLD1Q8N8Z6 715 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF454Q8N9F8 522 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 GPR152Q8TDT2 470 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 TXNDC15Q96J42 360 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 COQ10AQ96MF6 247 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 TSSK2Q96PF2 358 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 CDK15Q96Q40 435 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 CMSS1Q9BQ75 279 aaKnown RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 OR51B5Q9H339 312 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 SFXN1Q9H9B4 322 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 IL37Q9NZH6 218 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 PHRF1Q9P1Y6 1649 aaKnown RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 KNDC1Q76NI1 1749 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 MYO5BQ9ULV0 1848 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 TCRBV3S1A0A5B6 114 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 TUBAL3A6NHL2 446 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF850A8MQ14 1090 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 H7C1Q1 480 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 NFKBIEO00221 500 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 LEFTY2O00292 366 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 ADAM10O14672 748 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 SHOXO15266 292 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 LCMT2O60294 686 aaKnown RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 HTR3BO95264 441 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 SFTPBP07988 381 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 BMP1P13497 986 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 HOXB2P14652 356 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 BPIP17213 487 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 POU3F3P20264 500 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 IL32P24001 234 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 SPOCK1Q08629 439 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 FAM162BQ5T6X4 162 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 AGAP6Q5VW22 663 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 IDO2Q6ZQW0 420 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 LACC1Q8IV20 430 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 CNTN4Q8IWV2 1026 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF321PQ8N8H1 164 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 KDM1BQ8NB78 822 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 DBF4BQ8NFT6 615 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 AGAP4Q96P64 663 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 SNX18Q96RF0 628 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 DCAF13Q9NV06 445 aaKnown RBP5.8□□□□□ -1.48
SCN1A-203ENST00000409050 SMOXQ9NWM0 555 aa5.8□□□□□ -1.48
SCN1A-203ENST00000409050 FAM208AQ9UK61 1670 aaKnown RBP5.79□□□□□ -1.48
SCN1A-203ENST00000409050 A0A1W2PPL8 197 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 C9JVG2 144 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 CDK1P06493 297 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 CTSOP43234 321 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-203ENST00000409050 RABIFP47224 123 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 PPP1R3AQ16821 1122 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 MPEG1Q2M385 716 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF619Q8N2I2 560 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 UBE2J2Q8N2K1 259 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 IL17RCQ8NAC3 791 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 LFNGQ8NES3 379 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 OR4K5Q8NGD3 323 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 OR5L1Q8NGL2 311 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 OR56B4Q8NH76 319 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 FNDC9Q8TBE3 224 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 SORCS1Q8WY21 1168 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF419Q96HQ0 510 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF300Q96RE9 604 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-203ENST00000409050 C1QTNF2Q9BXJ5 285 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 OR51J1Q9H342 316 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 ARNT2Q9HBZ2 717 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 GPR34Q9UPC5 381 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 TRAV6A0A075B6T7 132 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 HSPB2A8KAH6 182 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 PSMD9O00233 223 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 APOC3P02656 99 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 RPS17P08708 135 aaKnown RBP5.79□□□□□ -1.48
SCN1A-203ENST00000409050 OR12D1P0DN82 309 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 CHRNB1P11230 501 aa5.79□□□□□ -1.48
SCN1A-203ENST00000409050 RAB3AP20336 220 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms