RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 GATA5Q9BWX5 397 aaPredicted RBP19.8■□□□□ 0.76
CCDC28B-201ENST00000373602 MIEF1Q9NQG6 463 aa19.8■□□□□ 0.76
CCDC28B-201ENST00000373602 TAS2R9Q9NYW1 312 aa19.8■□□□□ 0.76
CCDC28B-201ENST00000373602 SENP1Q9P0U3 644 aa19.8■□□□□ 0.76
CCDC28B-201ENST00000373602 EXO1Q9UQ84 846 aaKnown RBP19.8■□□□□ 0.76
CCDC28B-201ENST00000373602 ARHGAP21Q5T5U3 1957 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 A0A087WV62 115 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 C2orf72A6NCS6 295 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 TSPAN2O60636 221 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 TRIM13O60858 407 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 SLITRK5O94991 958 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 JUNP05412 331 aaKnown RBP19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 NUDT17P0C025 328 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 BMP7P18075 431 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 NCBP2P52298 156 aaKnown RBP eCLIP19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 KRTAP10-9P60411 292 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 RIBC1Q8N443 379 aaPredicted RBP19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 WDSUB1Q8N9V3 476 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 FAM83FQ8NEG4 500 aaPredicted RBP19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 APOPT1Q96IL0 206 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 ADOQ96SZ5 270 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 TRMOQ9BU70 441 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 UGT2B28Q9BY64 529 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 MCCC2Q9HCC0 563 aa19.79■□□□□ 0.76
CCDC28B-201ENST00000373602 CSMD1Q96PZ7 3565 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 HSPB2A8KAH6 182 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 SLC28A1O00337 649 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 AZIN1O14977 448 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 COQ9O75208 318 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 SEC22BO75396 215 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 CBR3O75828 277 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 PNLIPRP2P54317 469 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 VSNL1P62760 191 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 EFR3AQ14156 821 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 SF3B4Q15427 424 aaKnown RBP eCLIP19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 HSPB2Q16082 182 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 RNF165Q6ZSG1 346 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 YRDCQ86U90 279 aaKnown RBP19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 TRABD2AQ86V40 505 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 LACC1Q8IV20 430 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 SLC44A2Q8IWA5 706 aaPredicted RBP19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 CLYBLQ8N0X4 340 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 BANPQ8N9N5 519 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 RNF138Q8WVD3 245 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 ABTB1Q969K4 478 aaPredicted RBP19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 WDYHV1Q96HA8 205 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 GLIPR2Q9H4G4 154 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 SERHLQ9NQF3 203 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 C19orf53Q9UNZ5 99 aaPredicted RBP19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 MAPRE3Q9UPY8 281 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 PTGDR2Q9Y5Y4 395 aa19.78■□□□□ 0.76
CCDC28B-201ENST00000373602 KDM4EB2RXH2 506 aaPredicted RBP19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 PLOD2O00469 737 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 CAPN3P20807 821 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 TACR1P25103 407 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 NTSP30990 170 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 CEACAM8P31997 349 aaPredicted RBP19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 TIMP3P35625 211 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 KRT20P35900 424 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 MC3RP41968 323 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 PSG6Q00889 435 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 DCST1Q5T197 706 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 Q6ZSR9 355 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 LARP4Q71RC2 724 aaKnown RBP eCLIP19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 PLCZ1Q86YW0 608 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 OR4N2Q8NGD1 307 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 EGLN2Q96KS0 407 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 AMDHD1Q96NU7 426 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 OR2B2Q9GZK3 357 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 IQCGQ9H095 443 aaKnown RBP19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 LRTM1Q9HBL6 345 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 C1orf109Q9NX04 203 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 LGALS13Q9UHV8 139 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 CAMK2AQ9UQM7 478 aa19.77■□□□□ 0.76
CCDC28B-201ENST00000373602 ADGRG4Q8IZF6 3080 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 RGS14O43566 566 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 ACTL6AO96019 429 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 IL12BP29460 328 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 ZNF155Q12901 538 aaPredicted RBP19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 NSUN5P2Q63ZY6 315 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 TMEM107Q6UX40 140 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 WDR53Q7Z5U6 358 aaPredicted RBP19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 OR2L13Q8N349 312 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 NAXEQ8NCW5 288 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 TNIP2Q8NFZ5 429 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 FCRL1Q96LA6 429 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 KCNN3Q9UGI6 736 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 OR10H1Q9Y4A9 318 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 WIF1Q9Y5W5 379 aa19.76■□□□□ 0.75
CCDC28B-201ENST00000373602 PDZD2O15018 2839 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 CD8B2A6NJW9 211 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 UPK1AO00322 258 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 PSMG1O95456 288 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 IFI6P09912 130 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 NEFHP12036 1026 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 ALDH3A1P30838 453 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 GCKP35557 465 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 DLX5P56178 289 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 WNT3P56703 355 aa19.75■□□□□ 0.75
CCDC28B-201ENST00000373602 MRPS22P82650 360 aaKnown RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms