RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 GPR180Q86V85 440 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 PLCZ1Q86YW0 608 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 CCDC170Q8IYT3 715 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 KRT78Q8N1N4 520 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 C10orf105Q8TEF2 133 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 ANKRD49Q8WVL7 239 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 TANKQ92844 425 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 OMA1Q96E52 524 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 VPS39Q96JC1 886 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 OR10A5Q9H207 317 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 EHD1Q9H4M9 534 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 KLRF1Q9NZS2 232 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 ZNF337Q9Y3M9 751 aa7.57□□□□□ -1.2
HMGB1P39-201ENST00000366304 MAGEB16A2A368 324 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SERINC4A6NH21 518 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 NCF1BA6NI72 391 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 NCF1CA8MVU1 366 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SHISA9B4DS77 424 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 M0R082 166 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 PLPP1O14494 284 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SEC14L5O43304 696 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 TNFRSF21O75509 655 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 TPM1P09493 284 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SLC35E2BP0CK96 405 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SLC35E2P0CK97 266 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 NCF1P14598 390 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 EPB42P16452 691 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 GALNSP34059 522 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 GCKP35557 465 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 BUD31P41223 144 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 CASP2P42575 452 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SSR2P43308 183 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 TMED10P49755 219 aaKnown RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 NUDT6P53370 316 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 C21orf58P58505 322 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 CDKL1Q00532 357 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SNTA1Q13424 505 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 TSNQ15631 228 aaKnown RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 TAB1Q15750 504 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 CCNG2Q16589 344 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 AP5B1Q2VPB7 878 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 COX20Q5RI15 118 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 LIPNQ5VXI9 398 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 ARMC3Q5W041 872 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 OR4C11Q6IEV9 310 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 MRM1Q6IN84 353 aaKnown RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 DRICH1Q6PGQ1 229 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 SCIMPQ6UWF3 145 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 NUP54Q7Z3B4 507 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 IGDCC3Q8IVU1 814 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 GPATCH11Q8N954 259 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 ZNF417Q8TAU3 575 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 RNF138Q8WVD3 245 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 ZNF587Q96SQ5 575 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 HBEGFQ99075 208 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 EGFL8Q99944 293 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 FAM167BQ9BTA0 163 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 ITPAQ9BY32 194 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 RTN4RQ9BZR6 473 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 ROGDIQ9GZN7 287 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 PITHD1Q9GZP4 211 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 BARX1Q9HBU1 254 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 WHRNQ9P202 907 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 PTBP2Q9UKA9 531 aaKnown RBP7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 VWA7Q9Y334 891 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 ZNF175Q9Y473 711 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 OARD1Q9Y530 152 aa7.56□□□□□ -1.2
HMGB1P39-201ENST00000366304 A0A0A6YYD5 115 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 LOC100289279A0A1B0GTE1 492 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 PABPN1LA6NDY0 278 aaKnown RBP7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 TCF21O43680 179 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 GCM2O75603 506 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 TPM3P06753 285 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 CD3EP07766 207 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 CTAGE8P0CG41 777 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 ZNF37AP17032 561 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 NAGAP17050 411 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 HSPA7P48741 367 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 NRG3P56975 720 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 RPP38P78345 283 aaKnown RBP7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 DEFA6Q01524 100 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 TGM3Q08188 693 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 E2F2Q14209 437 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 CRYMQ14894 314 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 EXOSC7Q15024 291 aaKnown RBP7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 TMEM35AQ53FP2 167 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 DEPDC1Q5TB30 811 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 KHDRBS2Q5VWX1 349 aaKnown RBP7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 HLA-DQA1Q5Y7H0 255 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 MFSD12Q6NUT3 480 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 FAM111BQ6SJ93 734 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 CLEC2AQ6UVW9 174 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 C8orf86Q6ZUL3 223 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 GSTA5Q7RTV2 222 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 GGNQ86UU5 652 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 GPSM1Q86YR5 675 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 CNTN4Q8IWV2 1026 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 CTAGE4Q8IX94 777 aa7.55□□□□□ -1.2
HMGB1P39-201ENST00000366304 LMNTD2Q8IXW0 634 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms