RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 CPNE7Q9UBL6 633 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 PCDHB11Q9Y5F2 797 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 ELOA3DA6NLF2 546 aaPredicted RBP15.26■□□□□ 0.03
NPHP3-201ENST00000337331 FGF18O76093 207 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 MC1RQ01726 317 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 ELOA3BQ3SY89 546 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 RIMKLAQ8IXN7 391 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 PIANPQ8IYJ0 282 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 CLECL1Q8IZS7 167 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 ZNF548Q8NEK5 533 aaPredicted RBP15.26■□□□□ 0.03
NPHP3-201ENST00000337331 ELOA3Q8NG57 546 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 SFXN2Q96NB2 322 aa15.26■□□□□ 0.03
NPHP3-201ENST00000337331 THAP7Q9BT49 309 aaPredicted RBP15.26■□□□□ 0.03
NPHP3-201ENST00000337331 EDDM13A0A1B0GTR0 161 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 KANTRA0A1W2PQU2 76 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 GPX5O75715 221 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 TGM6O95932 706 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 PAK4O96013 591 aaPredicted RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 IL3P08700 152 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 ACPPP15309 386 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 NDUFS1P28331 727 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 CTBP2P56545 445 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 KDELC1Q6UW63 502 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 CCDC116Q8IYX3 515 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 LRRC46Q96FV0 321 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 NUP214P35658 2090 aaPredicted RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 AGR2O95994 175 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 DBIP07108 87 aaKnown RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 ACSM4P0C7M7 580 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 ZNF865P0CJ78 1059 aaPredicted RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 ZNF3P17036 446 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 Q5BKY6 102 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 CELF5Q8N6W0 485 aaKnown RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 METTL21AQ8WXB1 218 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 ZNF578Q96N58 590 aaPredicted RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 IL17FQ96PD4 163 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 MCHR1Q99705 422 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 MGME1Q9BQP7 344 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 TRIM36Q9NQ86 728 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 ACSL6Q9UKU0 697 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 COL2A1P02458 1487 aaPredicted RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 OR2AT4A6NND4 320 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 F8W036 122 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 RPP14O95059 124 aaKnown RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 WDPCPO95876 746 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 ZNF823P16415 610 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 BPIP17213 487 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 GDI1P31150 447 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 OR12D2P58182 307 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 BLOC1S1P78537 153 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 RBBP4Q09028 425 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 GALNTL5Q7Z4T8 443 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 HMGN2P46Q86SG4 172 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 TMEM185AQ8NFB2 350 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 NDC1Q9BTX1 674 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 B3GNT4Q9C0J1 378 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 SRRQ9GZT4 340 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 SPATA6Q9NWH7 488 aaPredicted RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 DNMT3BQ9UBC3 853 aaKnown RBP15.25■□□□□ 0.03
NPHP3-201ENST00000337331 FBXL2Q9UKC9 423 aa15.25■□□□□ 0.03
NPHP3-201ENST00000337331 RHCEP18577 417 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 FAM209BQ5JX69 171 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 ARHGAP12Q8IWW6 846 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 OR56A1Q8NGH5 318 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 TMEM174Q8WUU8 243 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 TREX2Q9BQ50 279 aaPredicted RBP15.24■□□□□ 0.03
NPHP3-201ENST00000337331 TAPBPLQ9BX59 468 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 BTBD1Q9H0C5 482 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 TEX10Q9NXF1 929 aaPredicted RBP15.24■□□□□ 0.03
NPHP3-201ENST00000337331 ECM29Q5VYK3 1845 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 MBLAC1A4D2B0 266 aaPredicted RBP15.24■□□□□ 0.03
NPHP3-201ENST00000337331 BMP8BP34820 402 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 SLC19A1P41440 591 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 PITPNAQ00169 270 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 TMEM88Q6PEY1 159 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 BMP8AQ7Z5Y6 402 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 APCDD1Q8J025 514 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 LINC00518Q8N0U6 118 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 CAMKVQ8NCB2 501 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 CLRN3Q8NCR9 226 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 CHAC2Q8WUX2 184 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 INPP5KQ9BT40 448 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 PCDHGB1Q9Y5G3 927 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 C1orf196B1AJZ1 125 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 RTCAO00442 366 aaKnown RBP15.24■□□□□ 0.03
NPHP3-201ENST00000337331 YKT6O15498 198 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 ENTPD6O75354 484 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 LALBAP00709 142 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 CD3GP09693 182 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 HOXD8P13378 290 aaPredicted RBP15.24■□□□□ 0.03
NPHP3-201ENST00000337331 ETFAP13804 333 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 CDKN2CP42773 168 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 VLDLRP98155 873 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 GPR149Q86SP6 731 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 SORCS1Q8WY21 1168 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 SLC25A36Q96CQ1 311 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 KXD1Q9BQD3 176 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 TUBB1Q9H4B7 451 aa15.24■□□□□ 0.03
NPHP3-201ENST00000337331 CACNG2Q9Y698 323 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms